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Report for CCDS41224.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41224.3 Public Homo sapiens 1 MIB2 24 110 108 CCDS HistoryNCBI Gene:142678Re-query CCDS DB by CCDS ID:41224.3Re-query CCDS DB by GeneID:142678See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41224.1
The coding region has been updated to begin from an alternative downstream start codon, which is better conserved.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41224.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355826.10 ENSP00000348081.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355826.10Link to Ensembl Protein Viewer:ENSP00000348081.6Re-query CCDS DB by Nucleotide ID:ENST00000355826Re-query CCDS DB by Protein ID:ENSP00000348081
Original member Current member EBI ENST00000505820.7 ENSP00000426103.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505820.7Link to Ensembl Protein Viewer:ENSP00000426103.3Re-query CCDS DB by Nucleotide ID:ENST00000505820Re-query CCDS DB by Protein ID:ENSP00000426103
Original member Current member EBI ENST00000504599.6 ENSP00000426128.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504599.6Link to Ensembl Protein Viewer:ENSP00000426128.2Re-query CCDS DB by Nucleotide ID:ENST00000504599Re-query CCDS DB by Protein ID:ENSP00000426128
Original member Current member NCBI NM_001170687.4 NP_001164158.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170687.4Link to Protein Sequence:NP_001164158.3Re-query CCDS DB by Nucleotide ID:NM_001170687Re-query CCDS DB by Protein ID:NP_001164158Link to BLAST:NP_001164158.3
Original member Current member NCBI NM_080875.5 NP_543151.4 Accepted alive Link to Nucleotide Sequence:NM_080875.5Link to Protein Sequence:NP_543151.4Re-query CCDS DB by Nucleotide ID:NM_080875Re-query CCDS DB by Protein ID:NP_543151Link to BLAST:NP_543151.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164158.3 955 Q96AX9-1 955 100% 0 0
NP_543151.4 955 Q96AX9-1 955 100% 0 0

Chromosomal Locations for CCDS 41224.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1623453 1623699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1623774 1623945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1624795 1624901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1624991 1625185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1625286 1625428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1625546 1625653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1626650 1626754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1626837 1626999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1627074 1627207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1627296 1627444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1627673 1627829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1628019 1628179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1628273 1628399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1628489 1628722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1629133 1629311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1629385 1629566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1629639 1629704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1630292 1630530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2868 nt):
ATGGACCCAGACCCCCAGGCGGGCGTGCAGGTGGGCATGCGGGTGGTGCGCGGCGTGGACTGGAAGTGGG
GCCAGCAGGACGGCGGCGAGGGCGGCGTGGGCACGGTGGTGGAGCTTGGCCGCCACGGCAGCCCCTCGAC
ACCCGACCGCACAGTGGTCGTGCAGTGGGACCAGGGCACGCGCACCAACTACCGCGCCGGCTACCAGGGC
GCGCACGACCTGCTGCTGTACGACAACGCCCAGATCGGCGTCCGGCACCCCAACATCATCTGTGACTGCT
GCAAGAAGCACGGGCTGCGGGGGATGCGCTGGAAGTGCCGTGTGTGCCTGGACTACGACCTCTGCACGCA
GTGCTACATGCACAACAAGCATGAGCTCGCCCACGCCTTCGACCGCTACGAGACCGCTCACTCGCGCCCT
GTCACACTGAGTCCCCGCCAGGGCCTCCCGAGGATCCCACTAAGGGGCATCTTCCAGGGAGCGAAGGTGG
TGCGAGGCCCCGACTGGGAGTGGGGCTCACAGGATGGAGGGGAAGGGAAACCGGGCCGTGTGGTGGACAT
CCGTGGCTGGGATGTGGAGACAGGCCGGAGTGTGGCCAGCGTGACGTGGGCTGATGGTACCACCAATGTG
TACCGTGTGGGCCACAAGGGCAAGGTGGACCTCAAGTGTGTGGGCGAGGCAGCGGGCGGCTTCTACTACA
AGGACCACCTCCCAAGGCTCGGCAAGCCGGCGGAGCTGCAGCGCAGGGTGAGTGCTGACAGCCAGCCCTT
CCAGCACGGGGACAAGGTCAAGTGTCTGCTGGACACTGATGTCCTGCGGGAGATGCAGGAAGGCCACGGC
GGCTGGAACCCCAGGATGGCGGAGTTTATCGGACAGACGGGCACCGTGCATCGTATCACGGACCGCGGGG
ACGTGCGCGTGCAGTTCAACCACGAGACGCGCTGGACCTTCCACCCCGGGGCGCTCACCAAGCACCACTC
CTTCTGGGTGGGCGACGTGGTCCGGGTCATCGGCGACCTTGACACAGTGAAGCGGCTGCAGGCTGGGCAT
GGCGAGTGGACGGACGACATGGCCCCTGCCCTGGGCCGCGTCGGGAAGGTGGTGAAAGTGTTTGGAGACG
GGAACCTGCGTGTAGCAGTCGCTGGTCAGCGGTGGACCTTCAGCCCCTCCTGCCTGGTGGCCTACCGGCC
CGAGGAGGATGCCAACCTGGACGTGGCCGAGCGCGCCCGGGAGAACAAAAGCTCACTGAGCGTGGCCCTG
GACAAGCTTCGGGCCCAGAAGAGTGACCCAGAGCACCCGGGAAGGCTGGTGGTGGAGGTGGCGCTGGGTA
ACGCAGCCCGGGCTCTGGACCTGCTGCGGAGGCGCCCAGAGCAGGTGGACACCAAGAACCAAGGCAGGAC
CGCTCTGCAAGTGGCTGCCTACCTGGGCCAGGTGGAGTTGATACGGCTGCTGCTACAAGCCAGGGCGGGC
GTGGACCTGCCGGACGACGAGGGCAACACGGCACTGCACTACGCGGCCCTGGGGAACCAGCCCGAGGCCA
CCAGGGTGCTCCTGAGTGCTGGGTGCCGGGCGGACGCCATCAACAGCACCCAGAGCACAGCACTGCACGT
GGCCGTGCAGAGGGGCTTCCTGGAGGTGGTGCGGGCCCTGTGTGAGCGCGGCTGTGACGTCAACCTGCCC
GACGCCCACTCGGACACGCCCCTGCACTCCGCCATCTCGGCGGGCACTGGAGCCAGCGGCATTGTCGAGG
TCCTCACGGAGGTGCCAAACATCGATGTTACCGCCACCAACAGCCAGGGTTTCACCCTGCTGCACCATGC
CTCCCTCAAGGGTCACGCGCTAGCTGTGAGAAAGATTCTGGCTCGGGCGCGGCAGCTGGTGGACGCCAAG
AAGGAGGACGGCTTCACGGCGCTGCATCTGGCTGCCCTCAACAACCACCGCGAGGTGGCCCAGATCCTCA
TCCGGGAGGGCCGCTGTGACGTGAACGTGCGCAACCGGAAGCTGCAGTCCCCGCTGCATCTCGCCGTGCA
ACAGGCCCACGTGGGGCTGGTGCCGCTACTGGTGGACGCTGGGTGCAGTGTCAACGCCGAGGACGAGGAG
GGGGACACAGCCCTGCACGTGGCGCTGCAGCGTCATCAGCTGCTGCCCCTGGTGGCTGATGGGGCCGGGG
GGGACCCAGGGCCCTTGCAGCTGCTGTCCAGGCTACAGGCCTCGGGCCTCCCCGGCAGCGCGGAGCTGAC
GGTGGGCGCGGCGGTCGCCTGCTTCCTGGCGCTGGAGGGCGCCGACGTGAGCTACACCAACCACCGCGGT
CGGAGCCCGCTGGACCTGGCCGCCGAGGGTCGCGTGCTCAAGGCCCTTCAGGGCTGCGCCCAGCGCTTCC
GGGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGGCCCCAGGCAAACGCTCGGGACCCCCAACACCGTGAC
GAACCTGCACGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTCCGAGCTGGCGCTG
CTGGTGCTGTTCTCGCCGTGCCAGCACCGCACCGTGTGTGAGGAGTGCGCGCGCAGGATGAAGAAGTGCA
TCAGGTGCCAGGTGGTCGTCAGCAAGAAACTGCGCCCAGACGGCTCTGAGGTGGCGAGCGCCGCCCCCGC
CCCCGGCCCGCCGCGCCAGCTGGTGGAGGAGCTGCAGAGCCGCTACCGGCAGATGGAGGAACGCATCACC
TGCCCCATCTGCATCGACAGCCACATCCGCCTCGTGTTCCAGTGCGGCCACGGCGCATGCGCCCCCTGCG
GCTCCGCGCTCAGCGCCTGCCCCATCTGCCGCCAGCCCATCCGCGACCGCATCCAGATCTTCGTGTGA

Translation (955 aa):
MDPDPQAGVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG
AHDLLLYDNAQIGVRHPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKHELAHAFDRYETAHSRP
VTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKPGRVVDIRGWDVETGRSVASVTWADGTTNV
YRVGHKGKVDLKCVGEAAGGFYYKDHLPRLGKPAELQRRVSADSQPFQHGDKVKCLLDTDVLREMQEGHG
GWNPRMAEFIGQTGTVHRITDRGDVRVQFNHETRWTFHPGALTKHHSFWVGDVVRVIGDLDTVKRLQAGH
GEWTDDMAPALGRVGKVVKVFGDGNLRVAVAGQRWTFSPSCLVAYRPEEDANLDVAERARENKSSLSVAL
DKLRAQKSDPEHPGRLVVEVALGNAARALDLLRRRPEQVDTKNQGRTALQVAAYLGQVELIRLLLQARAG
VDLPDDEGNTALHYAALGNQPEATRVLLSAGCRADAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP
DAHSDTPLHSAISAGTGASGIVEVLTEVPNIDVTATNSQGFTLLHHASLKGHALAVRKILARARQLVDAK
KEDGFTALHLAALNNHREVAQILIREGRCDVNVRNRKLQSPLHLAVQQAHVGLVPLLVDAGCSVNAEDEE
GDTALHVALQRHQLLPLVADGAGGDPGPLQLLSRLQASGLPGSAELTVGAAVACFLALEGADVSYTNHRG
RSPLDLAAEGRVLKALQGCAQRFRERQAGGGAAPGPRQTLGTPNTVTNLHVGAAPGPEAAECLVCSELAL
LVLFSPCQHRTVCEECARRMKKCIRCQVVVSKKLRPDGSEVASAAPAPGPPRQLVEELQSRYRQMEERIT
CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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