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Report for CCDS22095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22095.1 Public Mus musculus 8 Rab20 23 108 98 CCDS HistoryNCBI Gene:19332Re-query CCDS DB by CCDS ID:22095.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033900.6 ENSMUSP00000033900.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033900.6Link to Ensembl Protein Viewer:ENSMUSP00000033900.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033900Re-query CCDS DB by Protein ID:ENSMUSP00000033900
Original member Current member NCBI NM_011227.2 NP_035357.1 Accepted alive Link to Nucleotide Sequence:NM_011227.2Link to Protein Sequence:NP_035357.1Re-query CCDS DB by Nucleotide ID:NM_011227Re-query CCDS DB by Protein ID:NP_035357Link to BLAST:NP_035357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035357.1 233 P35295 233 100% 0 0

Chromosomal Locations for CCDS 22095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11453997 11454526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11478328 11478499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCGGAAGCCGGATGGGAAGATCGTACTGCTGGGGGACATGAACGTGGGTAAAACGTCGCTGCTGCAGC
GCTACATGGAGCGTCGCTTCCCGGACACGGTCAGCACCGTGGGCGGCGCCTTCTACCTGAAGCAGTGGCG
TTCCTTCAACATCTCCATATGGGACACCGCAGGGCGGGAGCAGTTTCATGGTCTGGGCTCCCTGTACTGC
CGCGGAGCGGCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACA
GATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCT
GACCTCGGAGCGGGACACCGAGGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTC
TCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACA
AGATGCTGGATGAGAGGGAGATGCCAGCTGCTGAGCAGATGTGCTTCGAGACCAGTGCCAAGACTGGATA
CAATGTGGACCTCCTCTTTGAAACCTTGTTTGACCTGGTGGTACCTATGATCATGCGGCAGAGGGCTGAG
GAGTCAGATCAGACTGTGGATATAGCCAGCTGCAAAACACCCAAACAGACTAGATCCGGGTGTTGTGCCT
AA

Translation (233 aa):
MRKPDGKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSFNISIWDTAGREQFHGLGSLYC
RGAAAIILTYDVNHPQSLFELEDRFLGLTETANNDCLFAIVGNKVDLTSERDTEGGEKEGPASGKVGSCV
STKVPKQVQPEDAVALYKKILKYKMLDEREMPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMIMRQRAE
ESDQTVDIASCKTPKQTRSGCCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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