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Report for CCDS20021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20021.1 Public Mus musculus 6 Rab19 23 108 98 CCDS HistoryNCBI Gene:19331Re-query CCDS DB by CCDS ID:20021.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031986.4 ENSMUSP00000031986.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031986.4Link to Ensembl Protein Viewer:ENSMUSP00000031986.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031986Re-query CCDS DB by Protein ID:ENSMUSP00000031986
Original member Current member NCBI NM_011226.2 NP_035356.1 Accepted alive Link to Nucleotide Sequence:NM_011226.2Link to Protein Sequence:NP_035356.1Re-query CCDS DB by Nucleotide ID:NM_011226Re-query CCDS DB by Protein ID:NP_035356Link to BLAST:NP_035356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035356.1 217 P35294 217 100% 0 0

Chromosomal Locations for CCDS 20021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39383920 39384120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39388009 39388192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39389538 39389806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCAGTTCTCCAGCTCATCCAGGACATCAGATGAGAATGTGGACTATTTGTTCAAGGTCATCCTTATTG
GGGACTCCAACGTGGGGAAGACATGTGTGGTTCAGCATTTCAAATCTGGAGTCTACAGTGAGTCCCAGCA
GAACACCATTGGGGTGGACTTCACCGTGCGCTCCCTCGAGATAGACGGCAAGAAAGTGAAGATGCAGGTG
TGGGACACGGCAGGCCAGGAGCGCTTCCGTACCATCACCCAAAGCTACTACCGGAGTGCCCACGCAGCTA
TCATCGCTTATGATCTCACACGGCGGTCCACATTCGAATCTGTCCCTCACTGGATCCACGAGATAGAAAA
ATATGGAGCTGCCAACTTGGTCATCATGCTGATCGGGAACAAATCAGACCTGTGGGAGAAGCGGCATGTC
CTGTTTGAGGATGCCTGCACACTGGCTGAGAAGCATGGCCTCCTGGCTGTCTTGGAGACATCCGCCAAGG
AGTCCAGGAACATAGATGAAGTCTTTGTGCTCATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACCT
GTATGGGGAGAGTGCCCAGCAAGGTCTTTCCCAGGATTCCAGCCCAGTTCTTGTGGCCCAGGTCCCCAAT
GAGAGCACCCGCTGTACTTGTTGA

Translation (217 aa):
MQFSSSSRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQV
WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHV
LFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIARNSLHLYGESAQQGLSQDSSPVLVAQVPN
ESTRCTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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