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Report for CCDS36261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36261.1 Public Mus musculus 11 Dhrs11 23 108 98 CCDS HistoryNCBI Gene:192970Re-query CCDS DB by CCDS ID:36261.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047560.7 ENSMUSP00000043467.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047560.7Link to Ensembl Protein Viewer:ENSMUSP00000043467.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047560Re-query CCDS DB by Protein ID:ENSMUSP00000043467
Original member Current member NCBI NM_177564.5 NP_808232.2 Accepted alive Link to Nucleotide Sequence:NM_177564.5Link to Protein Sequence:NP_808232.2Re-query CCDS DB by Nucleotide ID:NM_177564Re-query CCDS DB by Protein ID:NP_808232Link to BLAST:NP_808232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808232.2 260 Q3U0B3 260 100% 0 0

Chromosomal Locations for CCDS 36261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84821260 84821301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84821403 84821468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84821665 84821757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84822311 84822440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84823072 84823166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84825368 84825577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84828751 84828897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGACTAGAGCTGGCATGGAGCGGTGGCGCGACCGGCTGGCACTGGTGACGGGAGCCTCGGGGGGCATCG
GTGCGGCCGTGGCCCGGGCATTAGTCCAGCAGGGACTGAAGGTTGTGGGTTGTGCCCGCACCGTTGGCAA
CATCGAGGAGCTGGCTGCTGAATGTAAGAGTGCAGGCTACCCCGGGACTTTGATCCCCTACAGATGTGAC
CTGTCAAATGAGGAGGACATCCTCTCCATGTTCTCAGCTGTCCGATCCCAGCACAGTGGCGTGGATATCT
GCATCAACAATGCCGGCATGGCCCGGCCTGACACCCTGCTCTCGGGCAGCACCAGCGGATGGAAGGACAT
GTTCAATGTGAATGTGCTGGCCCTCAGCATCTGCACTCGGGAGGCTTATCAGTCCATGAAGGAGCGGAAC
ATAGACGACGGGCACATCATTAACATCAACAGCATGTGTGGCCACCGAGTCCCACCCCAGTCTGTGATCC
ATTTCTATAGTGCGACTAAGTATGCCGTCACTGCACTGACAGAGGGACTCAGGCAAGAGCTTCTGGAGGC
CCAGACCCATATCCGGGCCACGTGTATCTCTCCAGGCTTGGTAGAGACACAGTTCGCCTTCAAACTCCAT
GACAAGGACCCGGGGGAAGCAGCTGCCACCTATGAACACATAAAGTGTCTCAGACCAGAGGACGTGGCTG
AGGCTGTCATCTACGTTCTTAGCACACCCCCACATGTTCAGGTTGGTGACATCCAGATGAGGCCCACAGA
GCAGGTGACCTAG

Translation (260 aa):
MTRAGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD
LSNEEDILSMFSAVRSQHSGVDICINNAGMARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN
IDDGHIININSMCGHRVPPQSVIHFYSATKYAVTALTEGLRQELLEAQTHIRATCISPGLVETQFAFKLH
DKDPGEAAATYEHIKCLRPEDVAEAVIYVLSTPPHVQVGDIQMRPTEQVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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