NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29151.1 Public Mus musculus 18 Pura 23 108 98 CCDS HistoryNCBI Gene:19290Re-query CCDS DB by CCDS ID:29151.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051301.5 ENSMUSP00000059404.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051301.5Link to Ensembl Protein Viewer:ENSMUSP00000059404.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051301Re-query CCDS DB by Protein ID:ENSMUSP00000059404
Original member Current member NCBI NM_008989.4 NP_033015.1 Accepted alive Link to Nucleotide Sequence:NM_008989.4Link to Protein Sequence:NP_033015.1Re-query CCDS DB by Nucleotide ID:NM_008989Re-query CCDS DB by Protein ID:NP_033015Link to BLAST:NP_033015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033015.1 321 P42669 321 100% 0 0

Chromosomal Locations for CCDS 29151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36287162 36288127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCGGACCGAGACAGCGGCAGCGAGCAGGGTGGTGCGGCGCTGGGCTCGGGCGGCTCCCTAGGGCACC
CGGGCTCGGGCTCAGGCTCCGGCGGGGGCGGTGGTGGCGGCGGGGGCGGCGGCGGCAGTGGCGGCGGCGG
CGGGGCCCCGGGGGGGCTGCAGCACGAGACGCAGGAGCTGGCCTCCAAGCGGGTGGACATCCAGAACAAG
CGTTTCTACCTGGACGTGAAGCAGAACGCTAAGGGCCGTTTCCTGAAGATCGCAGAGGTGGGCGCTGGCG
GCAACAAGAGCCGCCTCACCCTCTCCATGTCTGTGGCCGTGGAGTTCCGCGACTACCTGGGCGACTTCAT
CGAGCACTACGCGCAGCTGGGCCCCAGCCAGCCACCCGACCTGGCCCAGGCACAGGACGAGCCACGCCGG
GCGCTCAAGAGCGAGTTCCTGGTGCGCGAAAACCGCAAGTACTACATGGATCTCAAGGAGAACCAGCGCG
GCCGCTTCCTGCGCATCCGCCAGACAGTCAACCGGGGGCCCGGCCTGGGCTCCACGCAGGGCCAGACCAT
TGCGCTGCCCGCACAGGGTCTCATCGAGTTCCGTGACGCTCTGGCCAAGCTCATCGACGACTATGGAGTG
GAGGAGGAGCCGGCCGAGCTGCCCGAGGGCACCTCCTTGACTGTGGACAACAAGCGCTTCTTCTTCGATG
TGGGTTCCAACAAGTACGGCGTGTTTATGCGAGTGAGTGAGGTGAAGCCCACCTACCGCAACTCCATCAC
CGTGCCCTACAAGGTGTGGGCCAAGTTCGGACACACCTTCTGCAAGTACTCCGAGGAGATGAAGAAGATT
CAAGAGAAACAGAGGGAGAAGCGGGCCGCTTGTGAGCAGCTCCACCAGCAGCAACAGCAGCAGCAAGAGG
AGACCACCGCTGCCACCCTGCTACTGCAGGGCGAGGAAGAAGGGGAAGAAGATTGA

Translation (321 aa):
MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGAPGGLQHETQELASKRVDIQNK
RFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEHYAQLGPSQPPDLAQAQDEPRR
ALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYGV
EEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMKKI
QEKQREKRAACEQLHQQQQQQQEETTAATLLLQGEEEGEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH