NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15715.1 Public Mus musculus 2 Ptf1a 23 108 98 CCDS HistoryNCBI Gene:19213Re-query CCDS DB by CCDS ID:15715.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028068.2 ENSMUSP00000028068.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028068.2Link to Ensembl Protein Viewer:ENSMUSP00000028068.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028068Re-query CCDS DB by Protein ID:ENSMUSP00000028068
Original member Current member NCBI NM_018809.2 NP_061279.2 Accepted alive Link to Nucleotide Sequence:NM_018809.2Link to Protein Sequence:NP_061279.2Re-query CCDS DB by Nucleotide ID:NM_018809Re-query CCDS DB by Protein ID:NP_061279Link to BLAST:NP_061279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061279.2 324 Q9QX98 324 100% 0 0

Chromosomal Locations for CCDS 15715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 19445861 19446635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19446967 19447166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACGCCGTACTCCTGGAGCACTTCCCCGGGGGCCTGGACACCTTCCCATCCCCTTACTTTGATGAGG
AAGATTTCTTCACCGACCAGTCCTCTCGGGACCCGCTGGAGGACAGCGACGAGCTGCTGGGGGACGAGCA
AGCAGAAGTAGAGTTCCTCAGCCACCAGCTACACGAATACTGCTACCGCGACGGGGCGTGCCTGCTGCTG
CAACCCGCGCCCTCGGCCGCCCCGCACGCGCTCGCCCCGCCGCCTTTGGGGGATCCTGGCGAGCCCGAGG
ACAACGTCAGCTATTGCTGCGATGCAGGGGCTCCTCTCGCTGCCTTCCCCTACTCGCCTGGCTCACCGCC
CTCGTGCCTCGCCTACCCGTGTGCCGCGGTGCTGTCCCCCGGTGCGCGGCTCGGTGGTTTGAACGGGGCT
GCGGCAGCGGCGGCAGCAAGGCGGCGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAGCTGCGACAAG
CCGCTAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCGTTCGCACAT
CCCCACGCTACCCTACGAAAAGCGCCTCTCCAAAGTAGACACGCTGCGCTTGGCCATAGGCTACATTAAC
TTCCTCAGCGAGCTGGTGCAAGCCGACCTGCCGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAG
GTGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGG
CACCCGTTCACCCTCCCCCAGTGACCCGGATTATGGTCTCCCTCCTCTTGCAGGGCACTCTCTTTCCTGG
ACTGATGAAAAACAGCTCAAAGAACAAAATATCATCCGTACAGCTAAAGTGTGGACCCCAGAGGACCCCA
GAAAACTCAACAGTAAATCTTTCGACAACATAGAGAACGAACCACCCTTTGAGTTTGTGTCCTGA

Translation (324 aa):
MDAVLLEHFPGGLDTFPSPYFDEEDFFTDQSSRDPLEDSDELLGDEQAEVEFLSHQLHEYCYRDGACLLL
QPAPSAAPHALAPPPLGDPGEPEDNVSYCCDAGAPLAAFPYSPGSPPSCLAYPCAAVLSPGARLGGLNGA
AAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYIN
FLSELVQADLPLRGSGAGGCGGPGGSRHLGEDSPGNQAQKVIICHRGTRSPSPSDPDYGLPPLAGHSLSW
TDEKQLKEQNIIRTAKVWTPEDPRKLNSKSFDNIENEPPFEFVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH