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Report for CCDS43926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43926.1 Public Homo sapiens X FAM47A 24 110 108 CCDS HistoryNCBI Gene:158724Re-query CCDS DB by CCDS ID:43926.1Re-query CCDS DB by GeneID:158724See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346193.5 ENSP00000345029.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000346193.5Link to Ensembl Protein Viewer:ENSP00000345029.3Re-query CCDS DB by Nucleotide ID:ENST00000346193Re-query CCDS DB by Protein ID:ENSP00000345029
Original member Current member NCBI NM_203408.4 NP_981953.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203408.4Link to Protein Sequence:NP_981953.2Re-query CCDS DB by Nucleotide ID:NM_203408Re-query CCDS DB by Protein ID:NP_981953Link to BLAST:NP_981953.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_981953.2 791 Q5JRC9 791 100% 0 0

Chromosomal Locations for CCDS 43926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 34129903 34132278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGGGGACCAGAGGCTGCAGGACTGGCTGAGGTCCCCGGGCATGGACTCCAAGCCCTGGTACTGTAACA
AACGGCCTTCCAAGTGCTTCGCGAAGTGCAAGCACAGGCGCCTGAGGTTCCCACCCATGGACACCCAGAA
CTGGGTATTTGTGAAGGAGGGCATGGACGACTTCCGCTACGGCTGTCCGTCTCCCGAAGATACTCTCGTT
TGTCGCCGTGACGAGTTTTTACTCCCCAAAATATCTCTCAGAGGTCCCCAAGCTGACCCCAAAAGCGGGC
AGAAAAAGCTGCTCAAGAAAGCGGCCCTATTTTCCAAGCTCTCTCCAGCCCAGCTAGCACGGAAGGCGTT
CGTAGAGCAAGTGGAAGCCCAGCTAATGGCCAAGCATCCCTTGGCCATGTACCCCAATCTGGGAGAAGAT
ATGCCTCCAGATCTCCTACTACAGGTGCTGAAACACCTGGATCCTGAGAGGGAGCTGGAGGACGCTTGGG
CTTGTTGTGAGACCCAGGAGAAGACAACAGAGGTACCCACTGAGCCTGGTAAACATCCCTGTGGGGAATT
CTGCCTGAAGCCTCCCGAGACTCCGGTGTCCCATCTCCTCCCAGAGCCTCCCGAGACTGGAGTGTCCCAT
CTAAGCCCGGAGCCTCCCAAGACTCCGGTGTCCAGTCTCCGCCCGGAGCCTCCTGAGACTGGAGTGTCCC
ATCTCCGCCCGGAGCCTCCAGAGACTGGAGTGTCCCATATCCGCCCGGGGCCTCCCATCACTCGTCGGAG
ATCCAGTCTCCTACGACAGCTGCTGAAACTGGATTCTGAGAGGAAGCTGGAAGACGCACGGGCTCCTTGT
GAGGGCCGGGAGAAGACAACTGACGAACCCACAGAGCCTGGTAAATACCCTTGTGGGAAATTCTGTCCTC
GGCCTTTCGAGACTCCACTGTCCCATCTCCGCCAGGAGCCTCCCAAGACTCCGGTGTCCAGTCTCCGCCC
GGAGCCTCCGGAGACTGGAGAGTCCCATCTCCGCCTAGAGCATTCCAAGACTCGTCGGGGGTCCAGTCTC
CGCTCGGAGCCTTCCGAGACTGGAGTGTCCCGTCTCCGCCTAGCGCCTCCCAAGACTCGTCGGGGGTCCA
GTCTCCACGCGGAGCCTTCCAAGACTGGAGTGTCCCATCTCAGCCCGGAGCCTCCCAAGACTGAAGTGTC
TCATCTCCACCCAGTGCCTCCCAAGACTGGAGTGTGCCATCTCCGCCTGGAACCTCCCGACACTAGTCAG
GTGTCCAATCTCCTACTATACATACTGAAAGTGCTGGATTCTGGGAGGACGCTGAAGGACGTATGGGATC
GTTGTGAGGCCCGGGTGAAGAAAACTAAGGAACCCACCGAGCCTCATAAATCCCCTTGTGGGGAACCCTG
CCTGCAGCCTCCCGAGACTCAGGTGTCCCATCCCCACCCGGAACATCCCAAGACACGTCGGAGGTCCAGT
CTCCACTCGCAGCCTCCCAAGACTCGTCGGACGTCCAGTCTCCGCTCGGAGCCTCCCAAGACTCGTCGGA
CGTCCAGTCTCCGCTCGGAGCCTCCCAAGACTCGTCGGACGTCCAGTCTCGGTCCGGAGCCTCCCAAGAC
TCGTCGAGTGTCCAGTCTCCGCCCGGAGCTTCCCAAGAGTCGTCGGGTGTCCAGTCTCCACCCGGAGCCT
CCCAAAGCTCCAGAGTCCCATCAATTCTCGGAGCCTCCCAAGATTCGAGCATCCTACATAAAAGAACTGC
TTCAGGAAGATACACCAAGCACAAAAGAGTGCGTTTCTGACTCTCTTCAATATAGATACACATCGGAAAA
ACTCCGTGAATTCTTCAAGTGGGCTGGAGACCTGGGAGCTGATGAAGAATCCATCAGGAATCTGTTTGAC
TTTACCCCCAAGTACAGAGCAACCCATGAGGACCAAAAGTTTAAGAAAGTAAAGGAGTGTTCCTCAGAGC
TGAAGTACAGCATGGAGCTAGATGAAAAGGATGAGGACAAATTCTTCTCACAGGAAAAATACTGGGGCAG
GAAATTCCACACGCCATCGAATTCTTATACCGCACAGCGTGTGAAGATGAAGTATGGAGCATGGTACCTC
AAGCCTAAGTTGTGGAAAAAGCTAAGAAGTGATGAACCTTTGATTGACCCCAAGCTCTTACTTAAAAAGC
CTGATGAACCTGACGTTCTTGACGATCTTTATGGACCAATTGCCTTTAAGGATTTCATTCTAAGCAAGGG
CTATGAAATGCCTGGCATCATTCAAAGGCTGTTTGCCAGGAGGGGATGGACTTATGACTCTGTTAAGACT
CCTATTCAACGTGCAATGATATTTTACAAGTACAAAGAAATCGTAGAGGCATCGGAAGAAGATTAG

Translation (791 aa):
MGDQRLQDWLRSPGMDSKPWYCNKRPSKCFAKCKHRRLRFPPMDTQNWVFVKEGMDDFRYGCPSPEDTLV
CRRDEFLLPKISLRGPQADPKSGQKKLLKKAALFSKLSPAQLARKAFVEQVEAQLMAKHPLAMYPNLGED
MPPDLLLQVLKHLDPERELEDAWACCETQEKTTEVPTEPGKHPCGEFCLKPPETPVSHLLPEPPETGVSH
LSPEPPKTPVSSLRPEPPETGVSHLRPEPPETGVSHIRPGPPITRRRSSLLRQLLKLDSERKLEDARAPC
EGREKTTDEPTEPGKYPCGKFCPRPFETPLSHLRQEPPKTPVSSLRPEPPETGESHLRLEHSKTRRGSSL
RSEPSETGVSRLRLAPPKTRRGSSLHAEPSKTGVSHLSPEPPKTEVSHLHPVPPKTGVCHLRLEPPDTSQ
VSNLLLYILKVLDSGRTLKDVWDRCEARVKKTKEPTEPHKSPCGEPCLQPPETQVSHPHPEHPKTRRRSS
LHSQPPKTRRTSSLRSEPPKTRRTSSLRSEPPKTRRTSSLGPEPPKTRRVSSLRPELPKSRRVSSLHPEP
PKAPESHQFSEPPKIRASYIKELLQEDTPSTKECVSDSLQYRYTSEKLREFFKWAGDLGADEESIRNLFD
FTPKYRATHEDQKFKKVKECSSELKYSMELDEKDEDKFFSQEKYWGRKFHTPSNSYTAQRVKMKYGAWYL
KPKLWKKLRSDEPLIDPKLLLKKPDEPDVLDDLYGPIAFKDFILSKGYEMPGIIQRLFARRGWTYDSVKT
PIQRAMIFYKYKEIVEASEED


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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