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Report for CCDS31138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31138.1 Public Homo sapiens 10 SFMBT2 24 110 108 CCDS HistoryNCBI Gene:57713Re-query CCDS DB by CCDS ID:31138.1Re-query CCDS DB by GeneID:57713See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361972.8 ENSP00000355109.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361972.8Link to Ensembl Protein Viewer:ENSP00000355109.4Re-query CCDS DB by Nucleotide ID:ENST00000361972Re-query CCDS DB by Protein ID:ENSP00000355109
Original member Current member EBI ENST00000397167.6 ENSP00000380353.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397167.6Link to Ensembl Protein Viewer:ENSP00000380353.1Re-query CCDS DB by Nucleotide ID:ENST00000397167Re-query CCDS DB by Protein ID:ENSP00000380353
Original member Current member NCBI NM_001018039.1 NP_001018049.1 Accepted alive Link to Nucleotide Sequence:NM_001018039.1Link to Protein Sequence:NP_001018049.1Re-query CCDS DB by Nucleotide ID:NM_001018039Re-query CCDS DB by Protein ID:NP_001018049Link to BLAST:NP_001018049.1
Original member Current member NCBI NM_001029880.3 NP_001025051.1 Accepted alive Link to Nucleotide Sequence:NM_001029880.3Link to Protein Sequence:NP_001025051.1Re-query CCDS DB by Nucleotide ID:NM_001029880Re-query CCDS DB by Protein ID:NP_001025051Link to BLAST:NP_001025051.1
Original member Current member NCBI NM_001387889.1 NP_001374818.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387889.1Link to Protein Sequence:NP_001374818.1Re-query CCDS DB by Nucleotide ID:NM_001387889Re-query CCDS DB by Protein ID:NP_001374818Link to BLAST:NP_001374818.1
Original member Current member NCBI NM_001387891.1 NP_001374820.1 Accepted alive Link to Nucleotide Sequence:NM_001387891.1Link to Protein Sequence:NP_001374820.1Re-query CCDS DB by Nucleotide ID:NM_001387891Re-query CCDS DB by Protein ID:NP_001374820Link to BLAST:NP_001374820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018049.1 894 Q5VUG0 894 100% 0 0
NP_001025051.1 894 Q5VUG0 894 100% 0 0
NP_001374818.1 894 Q5VUG0 894 100% 0 0
NP_001374820.1 894 Q5VUG0 894 100% 0 0

Chromosomal Locations for CCDS 31138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7163770 7163910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7170928 7171056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7171895 7172158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7172495 7172661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7175990 7176165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7188624 7188733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7197548 7197687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7200414 7200484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7202480 7202522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7205815 7205928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7220411 7220537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7227855 7227937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7243558 7243705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7248548 7248649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7276892 7276989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7283904 7284150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7285866 7285954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7367649 7367889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7370281 7370375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7381799 7381898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGGAGAGCACTTTGTCAGCTTCCAATATGCAAGACCCTTCATCTTCACCCTTGGAAAAGTGTCTCGGCT
CAGCTAATGGAAATGGAGACCTTGATTCTGAAGAAGGCTCAAGCTTGGAGGAAACTGGCTTTAACTGGGG
AGAATATTTGGAAGAGACAGGAGCAAGTGCTGCTCCCCACACATCATTCAAACACGTTGAAATCAGCATT
CAGAGCAACTTCCAGCCAGGAATGAAATTGGAAGTGGCTAATAAGAACAACCCGGACACGTACTGGGTGG
CCACGATCATTACCACGTGCGGGCAGCTGCTGCTTCTGCGCTACTGCGGTTACGGGGAGGACCGCAGGGC
CGACTTCTGGTGTGACGTAGTCATCGCGGATTTGCACCCCGTGGGGTGGTGCACACAGAACAACAAGGTG
TTGATGCCGCCGGACGCAATCAAAGAGAAGTACACAGACTGGACAGAATTTCTCATACGTGACTTGACTG
GTTCGAGGACAGCACCCGCCAACCTCCTGGAAGGTCCTCTGCGAGGGAAAGGCCCTATAGACCTCATTAC
AGTTGGTTCCTTAATAGAACTTCAGGATTCCCAGAACCCTTTTCAGTACTGGATAGTTAGTGTGATTGAA
AATGTTGGAGGAAGATTACGCCTTCGCTATGTGGGATTGGAGGACACTGAATCCTATGACCAGTGGTTGT
TTTACTTGGATTACAGACTTCGACCAGTTGGTTGGTGTCAAGAGAATAAATACAGAATGGACCCACCTTC
AGAAATCTATCCTTTGAAGATGGCCTCTGAATGGAAATGTACTCTGGAAAAATCCCTTATTGATGCTGCC
AAATTTCCTCTTCCAATGGAAGTGTTTAAGGATCACGCAGATTTGCGAAGCCATTTCTTCACAGTTGGGA
TGAAGCTTGAGACAGTGAATATGTGCGAGCCCTTTTACATCTCTCCTGCGTCGGTGACTAAGGTTTTTAA
CAATCACTTTTTTCAAGTGACTATTGATGACCTAAGACCTGAACCAAGTAAACTGTCAATGCTGTGCCAT
GCAGATTCTTTGGGGATTTTGCCAGTACAGTGGTGCCTTAAAAATGGAGTCAGCCTCACTCCTCCCAAAG
GTTACTCTGGCCAGGACTTCGACTGGGCAGATTATCACAAGCAGCATGGGGCGCAGGAAGCCCCTCCCTT
CTGCTTCCGAAATACATCATTCAGTCGAGGTTTCACAAAGAACATGAAACTTGAAGCTGTGAACCCCAGG
AATCCAGGAGAACTGTGTGTGGCCTCCGTTGTGAGTGTGAAGGGGCGGCTAATGTGGCTTCACCTGGAAG
GGCTGCAGACTCCTGTTCCAGAGGTCATTGTTGATGTGGAATCCATGGACATCTTCCCAGTGGGCTGGTG
TGAAGCCAATTCTTATCCTTTGACTGCACCACACAAAACAGTCTCACAAAAGAAGAGAAAGATTGCAGTC
GTGCAACCAGAGAAACAATTGCCGCCCACAGTGCCTGTTAAGAAAATACCTCATGACCTTTGTTTATTCC
CTCACCTGGACACCACAGGAACCGTCAACGGGAAATACTGCTGTCCTCAGCTCTTCATCAACCACAGGTG
TTTCTCAGGCCCTTACCTGAACAAAGGAAGGATTGCAGAGCTACCTCAGTCGGTGGGACCGGGCAAATGC
GTGCTGGTTCTTAAAGAGGTTCTTAGCATGATAATCAACGCAGCCTACAAGCCTGGAAGGGTATTAAGAG
AATTACAGCTGGTAGAAGATCCCCACTGGAATTTCCAGGAAGAGACGCTGAAGGCCAAATACAGAGGCAA
AACATACAGGGCTGTGGTCAAAATCGTACGGACATCTGACCAAGTCGCAAATTTCTGCCGCCGAGTCTGT
GCCAAGCTAGAGTGCTGTCCAAATTTGTTTAGTCCTGTGCTGATATCTGAAAACTGCCCAGAGAACTGCT
CCATTCATACCAAAACCAAATACACCTATTACTATGGAAAGAGAAAGAAGATCTCCAAGCCCCCCATCGG
GGAAAGCAACCCCGACAGCGGACACCCCAAACCCGCCAGGCGGAGGAAGCGACGGAAATCCATTTTCGTG
CAGAAGAAACGGAGGTCTTCTGCCGTGGACTTCACCGCGGGCTCGGGGGAGGAAAGTGAAGAGGAGGACG
CTGACGCCATGGACGATGACACCGCCAGTGAGGAGACCGGCTCCGAGCTCCGGGATGACCAGACGGACAC
CTCGTCGGCGGAGGTGCCCTCGGCCCGGCCCCGGAGGGCCGTCACCCTGCGGAGCGGCTCAGAGCCCGTG
CGCCGGCCACCCCCAGAGAGGACACGAAGGGGCCGCGGGGCGCCGGCTGCCTCCTCAGCAGAGGAAGGGG
AGAAGTGCCCGCCGACCAAGCCCGAGGGGACAGAGGACACGAAACAGGAGGAGGAGGAGAGACTGGTTCT
GGAGAGCAACCCGTTGGAGTGGACGGTCACCGACGTGGTGAGGTTCATTAAGCTGACAGACTGTGCCCCC
TTGGCCAAGATATTTCAGGAGCAGGATATTGACGGCCAAGCACTCCTGCTTCTGACCCTTCCGACGGTGC
AGGAGTGCATGGAGCTGAAGCTGGGGCCTGCCATCAAGTTATGCCACCAGATCGAGAGAGTCAAAGTGGC
TTTCTACGCCCAGTACGCCAACTGA

Translation (894 aa):
MESTLSASNMQDPSSSPLEKCLGSANGNGDLDSEEGSSLEETGFNWGEYLEETGASAAPHTSFKHVEISI
QSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKV
LMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIE
NVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAA
KFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCH
ADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPR
NPGELCVASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAV
VQPEKQLPPTVPVKKIPHDLCLFPHLDTTGTVNGKYCCPQLFINHRCFSGPYLNKGRIAELPQSVGPGKC
VLVLKEVLSMIINAAYKPGRVLRELQLVEDPHWNFQEETLKAKYRGKTYRAVVKIVRTSDQVANFCRRVC
AKLECCPNLFSPVLISENCPENCSIHTKTKYTYYYGKRKKISKPPIGESNPDSGHPKPARRRKRRKSIFV
QKKRRSSAVDFTAGSGEESEEEDADAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPV
RRPPPERTRRGRGAPAASSAEEGEKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVTDVVRFIKLTDCAP
LAKIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAFYAQYAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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