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Report for CCDS15567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15567.1 Public Mus musculus 1 Psen2 23 108 98 CCDS HistoryNCBI Gene:19165Re-query CCDS DB by CCDS ID:15567.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010753.13 ENSMUSP00000010753.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010753.13Link to Ensembl Protein Viewer:ENSMUSP00000010753.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010753Re-query CCDS DB by Protein ID:ENSMUSP00000010753
Original member Current member EBI ENSMUST00000111105.7 ENSMUSP00000106734.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111105.7Link to Ensembl Protein Viewer:ENSMUSP00000106734.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111105Re-query CCDS DB by Protein ID:ENSMUSP00000106734
Original member Current member EBI ENSMUST00000111106.7 ENSMUSP00000106735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111106.7Link to Ensembl Protein Viewer:ENSMUSP00000106735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111106Re-query CCDS DB by Protein ID:ENSMUSP00000106735
Original member Current member EBI ENSMUST00000111108.9 ENSMUSP00000106737.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111108.9Link to Ensembl Protein Viewer:ENSMUSP00000106737.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111108Re-query CCDS DB by Protein ID:ENSMUSP00000106737
Original member NCBI NM_001128605.1 NP_001122077.1 Updated not alive Link to Nucleotide Sequence:NM_001128605.1Link to Protein Sequence:NP_001122077.1Re-query CCDS DB by Nucleotide ID:NM_001128605Re-query CCDS DB by Protein ID:NP_001122077
Current member NCBI NM_001128605.2 NP_001122077.1 Accepted alive Link to Nucleotide Sequence:NM_001128605.2Link to Protein Sequence:NP_001122077.1Re-query CCDS DB by Nucleotide ID:NM_001128605Re-query CCDS DB by Protein ID:NP_001122077Link to BLAST:NP_001122077.1
Original member NCBI NM_011183.3 NP_035313.2 Updated not alive Link to Nucleotide Sequence:NM_011183.3Link to Protein Sequence:NP_035313.2Re-query CCDS DB by Nucleotide ID:NM_011183Re-query CCDS DB by Protein ID:NP_035313
Current member NCBI NM_011183.4 NP_035313.2 Accepted alive Link to Nucleotide Sequence:NM_011183.4Link to Protein Sequence:NP_035313.2Re-query CCDS DB by Nucleotide ID:NM_011183Re-query CCDS DB by Protein ID:NP_035313Link to BLAST:NP_035313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122077.1 448 Q61144-1 448 99.7768% 0 1
NP_035313.2 448 Q61144-1 448 99.7768% 0 1

Chromosomal Locations for CCDS 15567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180227573 180227728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180228843 180228961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180229386 180229487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180229842 180229925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180233611 180233709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180234989 180235209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180235911 180235978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180238873 180239014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180240731 180240945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180245614 180245754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGCTCGCATTCATGGCCTCTGACAGCGAGGAAGAGGTGTGTGATGAGCGGACGTCCTTGATGTCAGCCG
AGAGCCCCACATCTCGCTCCTGCCAGGAAGGCAGGCCAGGCCCGGAGGATGGAGAGAGCACTGCCCAGTG
GAGGACTCAGGAGAGCGAAGAAGACTGTGAAGAGGACCCGGACCGCTACGCATGCAGTGGGGCTCCTGGG
CGACCGTCGGGCCTGGAGGAAGAGCTGACCCTCAAGTATGGGGCGAAGCATGTGATCATGCTATTCGTGC
CTGTCACGCTGTGTATGATCGTGGTGGTGGCCACTATCAAGTCTGTGCGTTTCTACACTGAGAAGAACGG
GCAGCTCATCTACACGCCCTTCACGGAGGACACGCCCTCGGTGGGCCAGCGGCTCCTCAACTCCGTGCTT
AACACCCTCATCATGATCAGCGTCATCGTAGTCATGACCATCTTCCTCGTGGTACTCTACAAGTATCGAT
GCTACAAGTTCATCCATGGCTGGCTGATCATGTCCTCCCTGATGCTCCTCTTCTTGTTCACCTACATCTA
CCTCGGGGAAGTGCTCAAGACCTACAATGTGGCCATGGACTATCCCACACTCTTCCTGGCTGTCTGGAAC
TTCGGGGCAGTGGGCATGGTGTGCATCCACTGGAAGGGGCCTCTGGTGCTGCAGCAGGCTTACCTTATTG
TGATCAGCGCACTCATGGCCCTGGTGTTCATCAAGTACCTGCCGGAGTGGTCTGCCTGGGTCATCTTGGG
TGCCATCTCTGTGTACGATCTCGTGGCCGTGCTGTGCCCCAAAGGGCCACTGAGGATGCTGGTGGAAACT
GCCCAGGAGAGAAATGAGCCCATATTTCCTGCCCTGATATACTCATCTGCCATGGTGTGGACGGTGGGCA
TGGCAAAGCTGGACCCCTCCTCTCAAGGAGCGCTGCAGCTCCCCTATGACCCAGAGATGGAAGAAGACTC
CTACGACAGTTTTGGAGAACCCTCATACCCTGAAGCCTTCGAAGCCCCCCTGCCTGGCTACCCAGGGGAG
GAGCTGGAGGAGGAGGAGGAAAGGGGCGTGAAGCTCGGCCTGGGAGACTTCATCTTCTACAGCGTCCTGG
TGGGCAAGGCTGCAGCCACTGGCAACGGAGACTGGAACACTACGCTGGCCTGTTTTATCGCCATCCTCAT
TGGCTTGTGTCTCACCCTCCTGCTGCTTGCTGTGTTCAAGAAGGCTCTGCCCGCCCTCCCCATCTCCATC
ACCTTTGGACTCATCTTCTACTTCTCCACAGACAACCTGGTGCGCCCTTTCATGGACACTCTGGCCTCCC
ACCAGCTCTACATCTGA

Translation (448 aa):
MLAFMASDSEEEVCDERTSLMSAESPTSRSCQEGRPGPEDGESTAQWRTQESEEDCEEDPDRYACSGAPG
RPSGLEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVL
NTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLAVWN
FGAVGMVCIHWKGPLVLQQAYLIVISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVET
AQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFGEPSYPEAFEAPLPGYPGE
ELEEEEERGVKLGLGDFIFYSVLVGKAAATGNGDWNTTLACFIAILIGLCLTLLLLAVFKKALPALPISI
TFGLIFYFSTDNLVRPFMDTLASHQLYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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