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Report for CCDS9346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9346.1 Public Homo sapiens 13 N4BP2L2 24 110 108 CCDS HistoryNCBI Gene:10443Re-query CCDS DB by CCDS ID:9346.1Re-query CCDS DB by GeneID:10443See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267068.6 ENSP00000267068.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267068.6Link to Ensembl Protein Viewer:ENSP00000267068.3Re-query CCDS DB by Nucleotide ID:ENST00000267068Re-query CCDS DB by Protein ID:ENSP00000267068
Original member Current member EBI ENST00000674465.1 ENSP00000501416.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674465.1Link to Ensembl Protein Viewer:ENSP00000501416.1Re-query CCDS DB by Nucleotide ID:ENST00000674465Re-query CCDS DB by Protein ID:ENSP00000501416
Original member Current member EBI ENST00000674349.1 ENSP00000501516.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674349.1Link to Ensembl Protein Viewer:ENSP00000501516.1Re-query CCDS DB by Nucleotide ID:ENST00000674349Re-query CCDS DB by Protein ID:ENSP00000501516
Original member Current member EBI ENST00000674421.1 ENSP00000501518.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674421.1Link to Ensembl Protein Viewer:ENSP00000501518.1Re-query CCDS DB by Nucleotide ID:ENST00000674421Re-query CCDS DB by Protein ID:ENSP00000501518
Original member Current member EBI ENST00000674484.1 ENSP00000501537.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674484.1Link to Ensembl Protein Viewer:ENSP00000501537.1Re-query CCDS DB by Nucleotide ID:ENST00000674484Re-query CCDS DB by Protein ID:ENSP00000501537
Original member Current member NCBI NM_001387080.1 NP_001374009.1 Accepted alive Link to Nucleotide Sequence:NM_001387080.1Link to Protein Sequence:NP_001374009.1Re-query CCDS DB by Nucleotide ID:NM_001387080Re-query CCDS DB by Protein ID:NP_001374009Link to BLAST:NP_001374009.1
Original member Current member NCBI NM_001387082.1 NP_001374011.1 Accepted alive Link to Nucleotide Sequence:NM_001387082.1Link to Protein Sequence:NP_001374011.1Re-query CCDS DB by Nucleotide ID:NM_001387082Re-query CCDS DB by Protein ID:NP_001374011Link to BLAST:NP_001374011.1
Original member Current member NCBI NM_001387101.1 NP_001374030.1 Accepted alive Link to Nucleotide Sequence:NM_001387101.1Link to Protein Sequence:NP_001374030.1Re-query CCDS DB by Nucleotide ID:NM_001387101Re-query CCDS DB by Protein ID:NP_001374030Link to BLAST:NP_001374030.1
Original member Current member NCBI NM_001387102.1 NP_001374031.1 Accepted alive Link to Nucleotide Sequence:NM_001387102.1Link to Protein Sequence:NP_001374031.1Re-query CCDS DB by Nucleotide ID:NM_001387102Re-query CCDS DB by Protein ID:NP_001374031Link to BLAST:NP_001374031.1
Original member Current member NCBI NM_014887.3 NP_055702.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014887.3Link to Protein Sequence:NP_055702.1Re-query CCDS DB by Nucleotide ID:NM_014887Re-query CCDS DB by Protein ID:NP_055702Link to BLAST:NP_055702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374009.1 583 Q92802-1 583 100% 0 0
NP_001374011.1 583 Q92802-1 583 100% 0 0
NP_001374030.1 583 Q92802-1 583 100% 0 0
NP_001374031.1 583 Q92802-1 583 100% 0 0
NP_055702.1 583 Q92802-1 583 100% 0 0

Chromosomal Locations for CCDS 9346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32517802 32518003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32521373 32521449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32522182 32522270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32527408 32527532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32535769 32537027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGTCTTATGGTGAAATTGAAGGTAAATTCTTGGGACCTAGAGAAGAAGTAACGAGTGAGCCACGCTGTA
AAAAATTGAAGTCAACCACAGAGTCGTATGTTTTTCACAATCATAGTAATGCTGATTTTCACAGAATCCA
AGAGAAAACTGGAAATGATTGGGTCCCTGTGACCATCATTGATGTCAGAGGACATAGTTATTTGCAGGAG
AACAAAATCAAAACTACAGATTTGCATAGACCTTTGCATGATGAGATGCCTGGTAATAGACCAGATGTTA
TTGAATCCATTGATTCACAGGTTTTACAGGAAGCACGTCCTCCATTAGTATCCGCAGACGATGAGATATA
TAGCACAAGTAAAGCATTTATAGGACCCATTTACAAACCCCCTGAGAAAAAGAAACGTAATGAAGGGAGG
AATGAGGCACATGTTCTAAATGGTATAAATGACAGAGGAGGACAAAAAGAGAAACAGAAATTTAACTCTG
AAAAATCAGAGATTGACAATGAATTATTCCAGTTTTACAAAGAAATTGAAGAGCTTGAAAAGGAAAAAGA
TGGTTTTGAGAACAGTTGTAAAGAATCTGAACCTTCTCAGGAACAATTTGTTCCATTTTATGAGGGTCAT
AATAATGGTCTCTTAAAACCTGATGAAGAAAAGAAAGATCTTAGTAATAAAGCTATGCCATCACATTGTG
ATTATCAGCAGAACTTGGGGAATGAGCCAGACAAATATCCCTGTAATGGACAAGTAATACCTACATTTTG
TGACACTTCATTTACTTCTTTCAGGCCTGAATGGCAGTCAGTATATCCTTTTATAGTGCCCTATGGTCCC
CCTCTTCCCAGTTTGAACTATCATTTAAACATTCAGAGATTCAGTGGTCCACCAAATCCACCATCAAATA
TTTTCCAAGCCCAAGATGACTCTCAGATACAAAATGGATATTATGTAAATAATTGTCATGTTAACTGGAA
TTGCATGACTTTTGATCAGAACAATGAATATACTGACTGTAGTGAGAATAGGAGTAGTGTTCATCCCTCT
GGAAATGGCTGCAGTATGCAAGATCGATATGTGAGTAATGGTTTCTGTGAAGTCAGAGAAAGATGCTGGA
AAGATCATTGTATGGACAAGCATAATGGAACAGACAGGTTTGTGAACCAGCAGTTTCAAGAGGAAAAGTT
AAATAAATTGCAGAAGTTACTTATTCTTTTAAGAGGTCTGCCTGGTTCTGGGAAAACAACATTGTCTCGA
ATTCTGCTTGGTCAGAATCGTGATGGCATTGTGTTCAGCACTGATGACTATTTTCACCATCAAGATGGGT
ACAGGTATAATGTTAATCAACTTGGTGATGCCCATGACTGGAACCAGAACAGAGCAAAACAAGCTATCGA
TCAGGGAAGATCTCCAGTTATAATAGATAACACTAATATACAAGCTTGGGAAATGAAGCCATATGTGGAA
GTGGCCATAGGAAAAGGATACAGAGTAGAGTTTCATGAACCTGAAACTTGGTGGAAATTTGATCCTGAAG
AATTAGAAAAGAGGAATAAACATGGTGTGTCTCGAAAGAAGATTGCTCAGATGTTGGATCGTTATGAATA
TCAAATGTCCATTTCTATTGTAATGAATTCAGTGGAACCATCACACAAAAGCACACAAAGACCTCCTCCT
CCACAGGGGAGACAGAGGTGGGGAGGCTCTCTTGGCTCACATAATCGTGTCTGTGTCACAAATAATCATT
AA

Translation (583 aa):
MSYGEIEGKFLGPREEVTSEPRCKKLKSTTESYVFHNHSNADFHRIQEKTGNDWVPVTIIDVRGHSYLQE
NKIKTTDLHRPLHDEMPGNRPDVIESIDSQVLQEARPPLVSADDEIYSTSKAFIGPIYKPPEKKKRNEGR
NEAHVLNGINDRGGQKEKQKFNSEKSEIDNELFQFYKEIEELEKEKDGFENSCKESEPSQEQFVPFYEGH
NNGLLKPDEEKKDLSNKAMPSHCDYQQNLGNEPDKYPCNGQVIPTFCDTSFTSFRPEWQSVYPFIVPYGP
PLPSLNYHLNIQRFSGPPNPPSNIFQAQDDSQIQNGYYVNNCHVNWNCMTFDQNNEYTDCSENRSSVHPS
GNGCSMQDRYVSNGFCEVRERCWKDHCMDKHNGTDRFVNQQFQEEKLNKLQKLLILLRGLPGSGKTTLSR
ILLGQNRDGIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQNRAKQAIDQGRSPVIIDNTNIQAWEMKPYVE
VAIGKGYRVEFHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPP
PQGRQRWGGSLGSHNRVCVTNNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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