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Report for CCDS14862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14862.1 Public Mus musculus 1 Prim2 23 108 98 CCDS HistoryNCBI Gene:19076Re-query CCDS DB by CCDS ID:14862.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027312.10 ENSMUSP00000027312.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027312.10Link to Ensembl Protein Viewer:ENSMUSP00000027312.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000027312Re-query CCDS DB by Protein ID:ENSMUSP00000027312
Original member NCBI NM_008922.2 NP_032948.1 Updated not alive Link to Nucleotide Sequence:NM_008922.2Link to Protein Sequence:NP_032948.1Re-query CCDS DB by Nucleotide ID:NM_008922Re-query CCDS DB by Protein ID:NP_032948
Current member NCBI NM_008922.3 NP_032948.1 Accepted alive Link to Nucleotide Sequence:NM_008922.3Link to Protein Sequence:NP_032948.1Re-query CCDS DB by Nucleotide ID:NM_008922Re-query CCDS DB by Protein ID:NP_032948Link to BLAST:NP_032948.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032948.1 505 P33610 505 100% 0 0

Chromosomal Locations for CCDS 14862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33454086 33454304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33464053 33464121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33480458 33480540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33484682 33484808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33512016 33512201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33514145 33514217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33533296 33533363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33628395 33628532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33630338 33630433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33662246 33662366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33663777 33663856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33667045 33667148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33668858 33669011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCAGTTCTCAGGAAGGATCCGGAAGAAGCTGCGATTGGCGGGTGACCAGAGAAATGCTAGTTACCCTC
ACAGCCTTCAGTTTTACCTGCAGCCGCCTACTGAAAACATATCGTTGACGGAGTTTGAAAACTTGGCTTT
TGACAGAGTTAAATTGCTTAAAGCAATTGAGAACCTCGGTGTGAGCTATGTGAAAGGAACCGAACAATAC
CAGAGTAAATTGGAGGCCGAGATTCGAAAGCTCAAGTTTTCCTACAGAGAGAACCTGGAGGATGAGTATG
AGCCACGGCGAAGGGACCACATCTCCCACTTTATCCTACGCCTCGCGTACTGCCAGTCGGAAGATCTTAG
ACGATGGTTTATTCAACAAGAAATGGATCTGCTTCGGTTTCGATTCAGTATTTTACCAAAGGATAAAGTC
CAGAGTTTCTTGAAGGATAGTCATTTGCATTTTGAGGCTATCAGTGACGAGGAGAAGACCCTTCGGGAAC
AGGATATCATGGCGTCCTCTCCAAGCCTAAGTGGGATCAAGTTGGAGTCAGAGTCAGTTTATAAGGTCCC
CTTTGCTGATGCTCTGGACCTGTTCAGAGGAAGGAAAGTCTACTTGGAAGATGGCTTTGCTTATGTGCCA
CTTAAGGACATCGTGGCCATTATCTTGAACGAGTTTAGAGCCACGCTGTCTAAGGCTTTGGCACTAACGG
CCAGGTCGCTGCCTGCTGTGCAGTCCGATGAACGACTTCAGCCTCTGCTCAACCACCTCAGTCATTCTTA
CACTGGTCAAGATTATAGTACCCAGAAGAACACCGGCAAGATTTCCTTAGATCAGATTGATTCGCTGTCT
ACAAAATCCTTCCCACCTTGCATGCGTCAGCTGCACAAGGCGCTGAGGGAGAACCACCATCTCCGTCACG
GAGGCCGGATGCAGTACGGCCTGTTCCTCAAGGGCATTGGGCTAACGCTGGAGCAGGCATTGCAGTTCTG
GAAGCAGGAGTTTATCAGAGGAAAGATGGACCCAGACAAGTTTGATAAAGGTTACTCTTACAATATCCGG
CATAGCTTCGGAAAGGAAGGCAAGAGGACAGACTATACGCCTTTCAGTTGCATGAAGATTATCCTGACCA
ACCCACCAGGCCAAGGGGATTATCATGGGTGCCCCTTCCGTCACAGTGATGCAGAGCTGCTGAAGCAGAA
GATGCAGTCCTACAAGATCCCTGCCTCGGGGATCAGCCAGATTTTGGATTTGGTAAAGGGGAATCATTAC
CAAGTAGCCTGTCAGAAGTACTTCGAGATGACACATAATGTGGACGATTGTGGCTTTTCTTTGAATCATC
CAAATCAGTTCTTTTTTGAGAGCCAGCGCATCCTAACTGGTGGCAAAGATATCAAGAAGGAAATCAGTCA
GCCAGAAACACCTCAGCACAAACCTAGCACCCAGAAGACCAGGGATGCTGCATCTGCGCTGGCCTCCCTA
GACTCCTCCCTGGAAATGGACCTGGAGGGGCTGGAAGAGTACTTTTAG

Translation (505 aa):
MQFSGRIRKKLRLAGDQRNASYPHSLQFYLQPPTENISLTEFENLAFDRVKLLKAIENLGVSYVKGTEQY
QSKLEAEIRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKV
QSFLKDSHLHFEAISDEEKTLREQDIMASSPSLSGIKLESESVYKVPFADALDLFRGRKVYLEDGFAYVP
LKDIVAIILNEFRATLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQKNTGKISLDQIDSLS
TKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIRGKMDPDKFDKGYSYNIR
HSFGKEGKRTDYTPFSCMKIILTNPPGQGDYHGCPFRHSDAELLKQKMQSYKIPASGISQILDLVKGNHY
QVACQKYFEMTHNVDDCGFSLNHPNQFFFESQRILTGGKDIKKEISQPETPQHKPSTQKTRDAASALASL
DSSLEMDLEGLEEYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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