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Report for CCDS67611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
67611.1 Public Homo sapiens 19 KCNN1 24 110 108 CCDS HistoryNCBI Gene:3780Re-query CCDS DB by CCDS ID:67611.1Re-query CCDS DB by GeneID:3780See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 67611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222249.13 ENSP00000476519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000222249.13Link to Ensembl Protein Viewer:ENSP00000476519.1Re-query CCDS DB by Nucleotide ID:ENST00000222249Re-query CCDS DB by Protein ID:ENSP00000476519
Original member Current member EBI ENST00000684775.1 ENSP00000507021.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684775.1Link to Ensembl Protein Viewer:ENSP00000507021.1Re-query CCDS DB by Nucleotide ID:ENST00000684775Re-query CCDS DB by Protein ID:ENSP00000507021
Original member Current member NCBI NM_001386974.1 NP_001373903.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386974.1Link to Protein Sequence:NP_001373903.1Re-query CCDS DB by Nucleotide ID:NM_001386974Re-query CCDS DB by Protein ID:NP_001373903Link to BLAST:NP_001373903.1
Original member Current member NCBI NM_002248.5 NP_002239.2 Accepted alive Link to Nucleotide Sequence:NM_002248.5Link to Protein Sequence:NP_002239.2Re-query CCDS DB by Nucleotide ID:NM_002248Re-query CCDS DB by Protein ID:NP_002239Link to BLAST:NP_002239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373903.1 543 Q92952-1 543 100% 0 0
NP_002239.2 543 Q92952-1 543 100% 0 0

Chromosomal Locations for CCDS 67611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17973889 17974290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17975092 17975187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17981709 17982127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17985312 17985453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17988415 17988525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17989716 17989843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17993054 17993062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17993490 17993559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17998152 17998406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGAACAGCCACAGCTACAATGGCAGCGTGGGGCGGCCGCTGGGCAGCGGGCCGGGCGCCCTGGGACGAG
ACCCTCCGGACCCTGAGGCCGGCCACCCCCCACAACCCCCGCACAGCCCGGGCCTCCAGGTGGTAGTGGC
CAAGAGTGAGCCAGCCCGGCCCTCACCCGGCAGCCCCCGGGGGCAGCCCCAGGACCAGGACGATGACGAG
GATGATGAGGAAGATGAGGCCGGCAGGCAGAGAGCCTCGGGGAAACCCTCAAATGTGGGCCACCGCCTGG
GCCACCGGCGGGCGCTCTTCGAGAAGCGGAAGCGCCTCAGCGACTATGCCCTCATTTTCGGCATGTTTGG
CATCGTCGTCATGGTGACGGAGACCGAGCTGTCCTGGGGGGTGTACACCAAGGAGTCTCTGTACTCATTC
GCACTCAAATGCCTCATCAGCCTCTCCACGGCCATCCTGCTGGGTCTCGTTGTCCTCTACCATGCCCGGG
AGATCCAGCTGTTCATGGTGGACAACGGGGCTGATGACTGGCGCATCGCCATGACCTGCGAGCGCGTGTT
CCTCATCTCGCTAGAGCTGGCAGTGTGCGCCATTCACCCGGTGCCCGGCCACTACCGCTTCACGTGGACG
GCGCGGCTGGCCTTCACGTACGCGCCCTCGGTGGCCGAGGCCGACGTGGACGTGCTGCTGTCCATCCCCA
TGTTCCTGCGCCTCTACCTGCTGGGCCGGGTGATGCTACTGCACAGCAAAATCTTCACGGACGCCTCGAG
CCGCAGCATCGGGGCCCTCAACAAGATCACCTTCAACACGCGCTTCGTCATGAAGACACTCATGACCATC
TGCCCCGGCACCGTGCTGCTGGTCTTCAGCATCTCCTCCTGGATCATCGCAGCCTGGACCGTGCGCGTCT
GCGAGAGGTACCACGACAAGCAGGAAGTGACCAGCAACTTCCTGGGGGCCATGTGGCTGATTTCCATCAC
CTTCCTCTCCATTGGCTACGGCGACATGGTGCCCCACACCTACTGCGGGAAGGGTGTGTGCCTGCTCACT
GGCATCATGGGAGCTGGCTGTACCGCGCTCGTGGTGGCTGTGGTGGCTCGGAAGCTGGAGCTCACCAAGG
CTGAGAAGCACGTGCACAACTTCATGATGGACACTCAGCTCACCAAGCGGGTAAAAAACGCCGCTGCTAA
CGTTCTCAGGGAGACGTGGCTCATCTACAAACATACCAGGCTGGTGAAGAAGCCAGACCAAGCCCGGGTT
CGGAAACACCAGCGTAAGTTCCTCCAAGCCATCCATCAGGCTCAGAAGCTCCGGAGTGTGAAGATCGAGC
AAGGGAAGCTGAACGACCAGGCTAACACGCTTACCGACCTAGCCAAGACCCAGACCGTCATGTACGACCT
TGTATCGGAGCTGCACGCTCAGCACGAGGAGCTGGAGGCCCGCCTGGCCACCCTGGAAAGCCGCTTGGAT
GCGCTGGGTGCCTCTCTACAGGCCCTGCCTGGCCTCATCGCCCAAGCCATACGCCCACCCCCGCCTCCCC
TGCCTCCCAGGCCCGGCCCCGGCCCCCAAGACCAGGCAGCCCGGAGCTCCCCCTGCCGGTGGACGCCCGT
GGCCCCCTCGGACTGCGGGTGA

Translation (543 aa):
MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQDQDDDE
DDEEDEAGRQRASGKPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSF
ALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWT
ARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTI
CPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLT
GIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARV
RKHQRKFLQAIHQAQKLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLD
ALGASLQALPGLIAQAIRPPPPPLPPRPGPGPQDQAARSSPCRWTPVAPSDCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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