NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75339.1 Public Homo sapiens 5 PCDHGB5 24 110 108 CCDS HistoryNCBI Gene:56101Re-query CCDS DB by CCDS ID:75339.1Re-query CCDS DB by GeneID:56101See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75339.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617380.2 ENSP00000478258.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617380.2Link to Ensembl Protein Viewer:ENSP00000478258.1Re-query CCDS DB by Nucleotide ID:ENST00000617380Re-query CCDS DB by Protein ID:ENSP00000478258
Original member Current member NCBI NM_018925.3 NP_061748.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018925.3Link to Protein Sequence:NP_061748.1Re-query CCDS DB by Nucleotide ID:NM_018925Re-query CCDS DB by Protein ID:NP_061748Link to BLAST:NP_061748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061748.1 923 Q9Y5G0-1 923 100% 0 0

Chromosomal Locations for CCDS 75339.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141398128 141400524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTT
TGTTCTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGT
GGGGAACCTCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCG
GAGAAGCCTTACTTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGG
AGATATGCGGGAAGAAGCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTA
TCACGTGAATGTGGAGATCGAGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTG
CAAATAAGTGAGTCTGCACAGCCTGGCACAAGATTTATACTAGAAGTAGCAGAAGATGCAGATATTGGCT
TAAACTCTCTGCAGAAGTATAAACTCTCTCTTAACCCAAGTTTCTCATTAATAATTAAGGAGAAACAGGA
TGGTAGTAAATACCCGGAACTGGCACTGGAGAAAACCTTAGACCGGGAACAACAGAGTTACCATCGTTTA
GTCCTGACTGCCTTGGACGGTGGACATCCACCCCTAAGCGGCACCACTGAGCTCCGGATCCAGGTAACCG
ACGCCAATGATAATCCCCCGGTATTCAACCGAGACGTGTACAGAGTCAGCCTTCGGGAAAACGTGCCACC
AGGCACCACTGTGTTGCAAGTGTCAGCCACTGACCAAGACGAGGGCATCAACTCAGAAATTACTTATTCC
TTCTACAGAACCGGGCAAATCTTTAGTCTGAATTCAAAGAGCGGAGAAATTACCACTCAAAAGAAACTGG
ATTTTGAAGAGACCAAGGAATATTCAATGGTTGTAGAAGGGAGGGATGGTGGTGGACTGGTTGCACAATG
TACAGTTGAAATTAATATTCAAGATGAAAATGACAATAGCCCAGAAGTTACATTCCATTCTCTACTTGAA
ATGATTCTGGAAAACGCGGTGCCTGGAACACTAATTGCTTTGATCAAAATACATGACCAAGATTCTGGGG
AAAATGGGGAGGTTAATTGTCAATTACAAGGCGAAGTCCCTTTTAAGATTATCTCTTCATCCAAAAATTC
GTATAAGTTGGTAACAGATGGAACCCTAGACCGAGAGCAAACCCCGGAGTACAATGTCACCATCACAGCC
ACAGACAGGGGCAAGCCGCCCCTCTCCTCCAGCATAAGCGTCATCCTACATATCAGAGACGTCAACGATA
ACGCTCCGGTTTTCCACCAGGCGTCCTACTTAGTCAGTGTACCCGAAAACAACCCTCCTGGGGCCTCCAT
CGCGCAAGTCTGCGCCTCGGACCTGGACTTGGGGTTGAACGGCCAAGTCTCCTACTCTATCATGGCCAGC
GACCTAGAGCCTCTGGCACTGGCCTCTTACGTGTCCATGAGCGCGCAAAGTGGGGTGGTGTTCGCGCAGC
GCGCCTTTGACTACGAGCAGCTGCGCACCTTCGAACTCACACTACAGGCCCGCGACCAGGGCTCGCCTGC
GCTCAGCGCAAACGTGAGCCTGCGCGTGTTGGTGGGCGACCGAAACGACAACGCACCGCGGGTGCTGTAC
CCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCGCGCTGCAGAGCCCGGCTACCTGG
TGACCAAGGTAGTGGCCGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGCTGCAGGC
TAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACAGGAGAGGTGCGCACAGCGCGTGCCTTGGGCGAC
AGGGACGCGGCCCGCCAGCGCCTGCTGGTTGCTGTGCGTGATGGTGGACAGCCGCCACTCTCCGCCACCG
CCACGCTGCACTTGGTCTTTGCTGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCTGTACC
CTCTGACCCCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTC
CTGGCCGTGATTCTGGCCGTTGCCTTGCGCCTGCGACGCTCCTCCAGCCCTGCCGCCTGGAGCTGCTTCC
AACCTGGTCTCTGTGTCAAGTCTGGACCTGTGGTTCCCCCCAACTACAGTCAGGGGACTTTGCCTTATTC
CTACAACCTATGTGTTGCACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAATTGAGT
TCAGGACAAGACATACTTTGTGGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGCGAGTCGA
CTTCCCATCCTGAGTTGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCAC
CAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAA
GCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCA
TGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTA
CATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGC
AATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (923 aa):
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS
EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFEL
QISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRL
VLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYS
FYRTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLE
MILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMAS
DLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLY
PALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGD
RDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFL
LAVILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLS
SGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG
NGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH