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Report for CCDS54924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54924.1 Public Homo sapiens 5 PCDHGB2 24 110 108 CCDS HistoryNCBI Gene:56103Re-query CCDS DB by CCDS ID:54924.1Re-query CCDS DB by GeneID:56103See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54924.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522605.2 ENSP00000429018.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000522605.2Link to Ensembl Protein Viewer:ENSP00000429018.1Re-query CCDS DB by Nucleotide ID:ENST00000522605Re-query CCDS DB by Protein ID:ENSP00000429018
Original member Current member NCBI NM_018923.3 NP_061746.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018923.3Link to Protein Sequence:NP_061746.1Re-query CCDS DB by Nucleotide ID:NM_018923Re-query CCDS DB by Protein ID:NP_061746Link to BLAST:NP_061746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061746.1 931 Q9Y5G2-1 931 100% 0 0

Chromosomal Locations for CCDS 54924.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141360136 141362556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGAAAGCGAGCTCAGGGAGGTGCGGGCTGGTGCGGTGGCTGCAGGTACTGTTGCCCTTCCTGTTGTCTT
TGTTCCCCGGGGCTCTCCCAGTCCAGATCCGCTATTCAATTCCAGAGGAGCTGGCCAAAAACTCGGTCGT
AGGAAACCTCGCCAAGGATCTGGGGCTCAGCGTCCGGGACTTGCCAGCCCGGAAGCTGCGGGTTAGCGCG
GAGAAGGAATATTTCACAGTAAACCCAGAAAGCGGAGACTTACTTGTGAGTGACAGAATAGACCGAGAAC
AGATATGCGGGAAGCAGCCTCTGTGTGTTCTGGATTTCGATACTGTCGCTGAAAATCCACTAAATATTTT
CTACATAGCAGTAATTGTGCAGGATATAAATGATAATACCCCGCTATTCAAACAGACTAAGATTAATTTA
AAAATTGGCGAATCCACTAAGCCAGGTACAACATTTCCACTTGACCCAGCCCTGGATTCAGATGTTGGTC
CTAACTCACTACAAAGATACCACCTTAATGACAACGAGTACTTTGATCTCGCTGAGAAACAGACTCCAGA
TGGTCGTAAATATCCTGAGTTGATTCTAAAACACTCTCTGGACAGAGAAGAGCACAGTTTACATCAATTG
GTCCTCACAGCTGTGGATGGCGGAGACCCACCTCAAAGTGGCACGACCCAAATCCGAATCAAAGTCACGG
ATGCCAACGATAACCCTCCAGTGTTCAGCCAGGACGTGTACAGGGTCACCCTGAGGGAGGACGTGCCGCC
GGGCTTCTTTGTGCTTCAAGTGACAGCCACCGACCGGGATGAAGGCATAAACGCAGAGATCACCTACTCC
TTTCATAATGTGGACGAACAAGTGAAACACTTTTTCAACTTAAATGAAAAAACAGGAGAAATCACGACAA
AGGATGATTTGGATTTTGAGATTGCAAGTAGTTACACTCTGAGTATCGAAGCAAAAGATCCTGGAGATCT
AGCAGCCCACTGCAGTATCCAAGTTGAAATTCTTGATGACAACGATTGTGCACCTGAAGTTATTGTGACT
TCAGTATCTACTCCCCTACCGGAGGATTCGCCACCAGGAACAGTGATCGCCTTGATAAAAACGAGAGACA
GAGACTCTGGAGAAAATGGAGAAGTTTACTGCCAAGTGTTGGGAAATGCCAAGTTTATTTTGAAATCTTC
CTCAAAGAACTATTACAAACTAGTGACAGACGGCGCTCTGGACCGGGAGGAGATCCCAGAATACAATCTC
ACCATCACAGCCACCGACGGGGGCAAGCCGCCCCTCTCCTCCAGCATAATTGTCACCCTGCACATCTCCG
ACGTCAACGATAATGCCCCAGTTTTCCAACAGACTTCCTACATGGTTCACGTGGCAGAGAACAATCCTCC
TGGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTTGGGCCCCAGTGGCCAAGTTTCCTACTCC
ATCGTAGCGAGCGACCTGAAGCCGCGGGAGATTTTATCCTACGTGTCCGTGAGCGCGCAGAGCGGGGTGG
TGTTCGCGCAGCGCGCCTTCGATCATGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCCGCGACCA
GGGCTCGCCCGCGCTCAGCGCCAACGTGAGCCTGCGCGTGTTAGTGGGCGACCTCAATGACAATGCGCCA
CGGGTGCTGTACCCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTGTCCTACCA
CGTGCTGCAGGCCAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGTGAGGTGCGCACAGCGCGT
GCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCAC
TCTCCGCTACGGCCACGCTGCACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGA
CCGCCGGGAGCCCTCTGACCCCCAGGCAAAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCA
GTGCTCTTCTTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGACTCTCTTCCAGGTCAGATGCTT
GGGACTGTTTTCAGCCTGGTCTCAGCTCCAAGCCTGGACCTGGGGTTCTCCCCAATTACAGTGAGGGTAC
ATTGCCCTATTCCTACAACCTGTGTGTTGCCTCACAATCAGCCAAGACAGAGTTCAATTTTCTGAACATA
ACCCCGGAATTGGTTCCCGCGCAAGATCTCGTCTGTGACAATGCCTCTTGGGAACAAAATACAAATCATG
GAGCCGCTGGGGTCCCTTTTGCCTCAGATACTATTTTGAAGCAAGCCCCGCCCAACACGGACTGGCGTTT
CTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAAC
CAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCA
CCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGT
GCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGG
GATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (931 aa):
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSA
EKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINL
KIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQL
VLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYS
FHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVT
SVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYS
IVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP
RVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTAR
ALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALIS
VLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNI
TPELVPAQDLVCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
DGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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