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Report for CCDS20169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20169.1 Public Mus musculus 6 Ppp1r17 23 108 98 CCDS HistoryNCBI Gene:19051Re-query CCDS DB by CCDS ID:20169.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052827.5 ENSMUSP00000059708.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052827.5Link to Ensembl Protein Viewer:ENSMUSP00000059708.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052827Re-query CCDS DB by Protein ID:ENSMUSP00000059708
Original member Current member NCBI NM_011153.4 NP_035283.1 Accepted alive Link to Nucleotide Sequence:NM_011153.4Link to Protein Sequence:NP_035283.1Re-query CCDS DB by Nucleotide ID:NM_011153Re-query CCDS DB by Protein ID:NP_035283Link to BLAST:NP_035283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035283.1 159 Q9Z2E4 159 100% 0 0

Chromosomal Locations for CCDS 20169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56022384 56022477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56026021 56026173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56026451 56026603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56031477 56031556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGTCCACTGAGATGATGACCACCGAGCCAGTGCCGCCTCTGGAGCTTTCAGACGACATACTAGGCAAGC
TGGATCCTCAGTGCAGCCCCTCAGATGACCTTTCAGACCAGTTCATTAAGGACTGTGACCTCAAAAAGAA
GCCAAGGAAGGGGAAGAATGTACAGGCCACTCTGAATGTTGAGTCAGATCAAAAGAAACCCAGGAGGAAA
GACACACCAGCAGTGCACATCCCACCTTTCATCCCAGGTGTGATTTCGGAACACTTAATCAAAAGATATG
ATGTTCAAGAGAGAATTCCAAAGGCCAAATCAGGCCCAGCTCTTCATAACTCTGATATGGAACAAAAAAG
GCCAAGGAGAAAAGACACGCCTGCCTTGCACATGCCTCCCTTTGTTGCAGGTCTGACTCTGCTCCGGGAT
GAGAGTGCAGGAGTGATTCTAGAGGATGAAGAAATGGATGGTGACAAGCTAGCTATTTAA

Translation (159 aa):
MSTEMMTTEPVPPLELSDDILGKLDPQCSPSDDLSDQFIKDCDLKKKPRKGKNVQATLNVESDQKKPRRK
DTPAVHIPPFIPGVISEHLIKRYDVQERIPKAKSGPALHNSDMEQKRPRRKDTPALHMPPFVAGLTLLRD
ESAGVILEDEEMDGDKLAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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