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Report for CCDS55492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55492.1 Public Homo sapiens X MBNL3 24 110 108 CCDS HistoryNCBI Gene:55796Re-query CCDS DB by CCDS ID:55492.1Re-query CCDS DB by GeneID:55796See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 55492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370844.5 ENSP00000359881.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370844.5Link to Ensembl Protein Viewer:ENSP00000359881.1Re-query CCDS DB by Nucleotide ID:ENST00000370844Re-query CCDS DB by Protein ID:ENSP00000359881
Original member Current member EBI ENST00000394311.7 ENSP00000377848.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394311.7Link to Ensembl Protein Viewer:ENSP00000377848.2Re-query CCDS DB by Nucleotide ID:ENST00000394311Re-query CCDS DB by Protein ID:ENSP00000377848
Original member Current member NCBI NM_001170701.3 NP_001164172.2 Accepted alive Link to Nucleotide Sequence:NM_001170701.3Link to Protein Sequence:NP_001164172.2Re-query CCDS DB by Nucleotide ID:NM_001170701Re-query CCDS DB by Protein ID:NP_001164172Link to BLAST:NP_001164172.2
Original member Current member NCBI NM_001170703.2 NP_001164174.1 Accepted alive Link to Nucleotide Sequence:NM_001170703.2Link to Protein Sequence:NP_001164174.1Re-query CCDS DB by Nucleotide ID:NM_001170703Re-query CCDS DB by Protein ID:NP_001164174Link to BLAST:NP_001164174.1
Original member Current member NCBI NM_001170704.2 NP_001164175.1 Accepted alive Link to Nucleotide Sequence:NM_001170704.2Link to Protein Sequence:NP_001164175.1Re-query CCDS DB by Nucleotide ID:NM_001170704Re-query CCDS DB by Protein ID:NP_001164175Link to BLAST:NP_001164175.1
Original member Current member NCBI NM_001386910.1 NP_001373839.1 Accepted alive Link to Nucleotide Sequence:NM_001386910.1Link to Protein Sequence:NP_001373839.1Re-query CCDS DB by Nucleotide ID:NM_001386910Re-query CCDS DB by Protein ID:NP_001373839Link to BLAST:NP_001373839.1
Original member Current member NCBI NM_001386911.1 NP_001373840.1 Accepted alive Link to Nucleotide Sequence:NM_001386911.1Link to Protein Sequence:NP_001373840.1Re-query CCDS DB by Nucleotide ID:NM_001386911Re-query CCDS DB by Protein ID:NP_001373840Link to BLAST:NP_001373840.1
Original member Current member NCBI NM_001386912.1 NP_001373841.1 Accepted alive Link to Nucleotide Sequence:NM_001386912.1Link to Protein Sequence:NP_001373841.1Re-query CCDS DB by Nucleotide ID:NM_001386912Re-query CCDS DB by Protein ID:NP_001373841Link to BLAST:NP_001373841.1
Original member Current member NCBI NM_001386913.1 NP_001373842.1 Accepted alive Link to Nucleotide Sequence:NM_001386913.1Link to Protein Sequence:NP_001373842.1Re-query CCDS DB by Nucleotide ID:NM_001386913Re-query CCDS DB by Protein ID:NP_001373842Link to BLAST:NP_001373842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164172.2 258 Q9NUK0-5 258 100% 0 0
NP_001164174.1 258 Q9NUK0-5 258 100% 0 0
NP_001164175.1 258 Q9NUK0-5 258 100% 0 0
NP_001373839.1 258 Q9NUK0-5 258 100% 0 0
NP_001373840.1 258 Q9NUK0-5 258 100% 0 0
NP_001373841.1 258 Q9NUK0-5 258 100% 0 0
NP_001373842.1 258 Q9NUK0-5 258 100% 0 0

Chromosomal Locations for CCDS 55492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 132379666 132379677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132382178 132382272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132384663 132384698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132386661 132386811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132390847 132391083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132392143 132392334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132406228 132406281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGTTCGCCCAGCAGATGCAGCTTATGCTCCAAAACGCTCAAATGTCATCACTTGGTTCTTTTCCTATGA
CTCCATCAATTCCAGCTAATCCTCCCATGGCTTTCAATCCTTACATACCACATCCTGGGATGGGCCTCGT
TCCTGCAGAACTTGTACCAAATACACCTGTTCTGATTCCTGGAAACCCACCTCTTGCAATGCCAGGAGCT
GTTGGCCCAAAACTGATGCGTTCAGATAAACTGGAGGTTTGCCGAGAATTTCAGCGTGGAAATTGTACCC
GTGGGGAGAATGATTGCCGCTATGCTCACCCTACTGATGCTTCCATGATTGAAGCGAGTGATAATACTGT
GACAATCTGCATGGATTACATCAAAGGTCGATGCTCGCGGGAGAAATGCAAGTACTTTCATCCTCCTGCA
CACTTGCAAGCCAGACTCAAGGCAGCTCATCATCAGATGAACCATTCAGCTGCCTCTGCCATGGCCCTGC
AGCCTGGTACACTGCAACTGATACCAAAGAGATCAGCACTGGAAAAGCCCAATGGTGCCACCCCGGTCTT
TAATCCCACTGTTTTCCACTGCCAACAGGCTCTGACTAACCTGCAGCTCCCACAGCCGGCATTTATCCCT
GCAGGGCCAATACTGTGCATGGCACCCGCTTCAAATATTGTGCCCATGATGCACGGTGCTACACCTACCA
CTGTGTCTGCAGCAACAACACCTGCCACCAGCGTTCCGTTCGCTGCACCAACTACAGGCAATCAGCTGAA
ATTCTGA

Translation (258 aa):
MFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMPGA
VGPKLMRSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPA
HLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLPQPAFIP
AGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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