NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43329.1 Public Homo sapiens 5 TNPO1 24 110 108 CCDS HistoryNCBI Gene:3842Re-query CCDS DB by CCDS ID:43329.1Re-query CCDS DB by GeneID:3842See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43329.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337273.10 ENSP00000336712.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337273.10Link to Ensembl Protein Viewer:ENSP00000336712.5Re-query CCDS DB by Nucleotide ID:ENST00000337273Re-query CCDS DB by Protein ID:ENSP00000336712
Original member Current member NCBI NM_002270.4 NP_002261.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002270.4Link to Protein Sequence:NP_002261.3Re-query CCDS DB by Nucleotide ID:NM_002270Re-query CCDS DB by Protein ID:NP_002261Link to BLAST:NP_002261.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002261.3 898 Q92973-1 898 100% 0 0

Chromosomal Locations for CCDS 43329.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72816738 72816752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72848385 72848498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72851244 72851319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72855774 72855923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72861808 72861914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72865596 72865729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72872639 72872720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72875615 72875737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72877228 72877346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72882467 72882527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72883064 72883232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72887070 72887222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72888078 72888303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72889786 72889957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72891810 72891896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893139 72893246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893377 72893535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893616 72893703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72896458 72896556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72897056 72897151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72900006 72900081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72900974 72901073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72903709 72903783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72905303 72905410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2697 nt):
ATGGTGTGGGACCGGCAAACCAAGATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTTCAGCAAATCC
TGCAGCTGTTGAAGGAGTCCCAGTCCCCAGACACCACCATCCAGAGAACCGTGCAACAAAAACTGGAACA
ACTTAATCAGTATCCAGACTTTAACAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAA
CCCACAAGATCATTGAGTGGTCTTATCTTGAAGAATAATGTGAAAGCACACTTTCAGAACTTCCCAAATG
GTGTAACAGACTTTATTAAAAGTGAATGTTTAAATAATATTGGTGACTCCTCTCCTCTGATTAGAGCCAC
TGTTGGTATTTTGATCACAACTATAGCCTCCAAGGGAGAATTGCAGAATTGGCCTGACCTCTTACCAAAA
CTCTGTAGCCTGTTGGATTCTGAAGATTATAATACCTGTGAGGGAGCATTTGGTGCCCTTCAGAAGATTT
GTGAAGATTCTGCTGAGATTTTAGACAGTGATGTTTTAGATCGTCCTCTCAACATCATGATTCCCAAATT
TTTACAGTTCTTCAAGCATAGTAGTCCAAAAATAAGGTCTCACGCTGTTGCATGTGTCAATCAGTTTATC
ATCAGTAGGACTCAAGCTCTAATGTTGCACATTGATTCTTTTATTGAGAATCTCTTTGCATTAGCTGGTG
ATGAAGAACCAGAGGTACGGAAAAATGTGTGCCGAGCACTTGTGATGTTGCTCGAAGTTCGAATGGATCG
CCTGCTTCCTCACATGCATAATATAGTTGAGTACATGCTACAGAGGACTCAAGATCAAGATGAAAATGTG
GCTTTAGAAGCCTGTGAATTTTGGCTAACTTTAGCTGAACAGCCAATATGCAAAGATGTACTCGTAAGGC
ATCTTCCTAAGTTGATTCCTGTGTTAGTGAATGGCATGAAGTACTCAGACATAGATATTATCCTACTTAA
GGGTGATGTTGAAGAAGACGAAACGATTCCTGATAGTGAACAGGATATACGGCCACGTTTTCACCGATCG
AGGACGGTGGCTCAGCAGCATGATGAAGATGGAATTGAAGAGGAAGATGATGATGATGATGAAATTGATG
ATGATGATACAATTTCTGACTGGAATCTAAGAAAATGTTCTGCTGCTGCCCTGGATGTTCTTGCAAATGT
GTATCGTGATGAACTGCTGCCACATATTTTGCCCCTTTTGAAAGAATTACTTTTTCATCATGAATGGGTT
GTTAAAGAATCAGGCATTTTGGTTTTAGGAGCAATTGCTGAAGGTTGCATGCAGGGCATGATTCCATACT
TGCCTGAGCTTATTCCTCACCTTATTCAGTGCCTCTCTGATAAAAAGGCTCTTGTGCGTTCCATAACATG
CTGGACTCTTAGCCGCTATGCACACTGGGTGGTCAGCCAGCCGCCAGACACGTACCTGAAGCCATTAATG
ACAGAATTGCTAAAGCGCATCCTGGACAGCAACAAGAGAGTACAAGAAGCTGCCTGCAGTGCCTTTGCTA
CCCTAGAAGAGGAGGCTTGTACAGAACTTGTTCCTTACCTTGCTTATATACTTGATACCCTGGTCTTTGC
ATTTAGTAAATACCAGCATAAGAACCTGCTCATTCTTTACGATGCCATAGGAACATTAGCAGATTCAGTA
GGACATCATTTAAACAAACCAGAATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATGT
TAAAGGATGAAGATAAAGATCTCTTCCCTTTACTTGAGTGCCTATCTTCAGTTGCCACAGCACTGCAGTC
TGGATTCCTTCCGTACTGTGAACCTGTGTATCAGCGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAA
GCCATGCTAAACAATGCTCAACCAGATCAATATGAAGCTCCAGATAAAGATTTTATGATAGTGGCTCTTG
ATTTACTGAGTGGCCTGGCTGAAGGACTTGGAGGCAACATTGAACAGCTGGTAGCCCGAAGTAACATCCT
GACACTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGAGTTCTTTTGCCCTGTTAGGT
GACCTCACAAAAGCTTGCTTTCAGCATGTTAAGCCTTGTATAGCTGATTTCATGCCAATATTGGGAACCA
ACCTAAATCCAGAATTCATTTCAGTCTGCAACAATGCCACATGGGCAATTGGAGAAATCTCCATTCAAAT
GGGTATAGAGATGCAGCCTTATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAACAGACCCAAC
ACACCAAAGACGTTGTTAGAGAATACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGG
TGGCCCCCATGCTACAGCAGTTTATAAGACCCTGGTGCACCTCTCTGAGAAACATAAGAGACAATGAGGA
AAAGGATTCAGCATTCCGTGGAATTTGTACCATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTT
ATATTTTTTTGTGATGCCGTTGCATCATGGATTAACCCAAAAGATGATCTCAGAGACATGTTCTGTAAGA
TCCTTCATGGATTTAAAAATCAAGTTGGCGATGAAAATTGGAGGCGTTTCTCTGACCAGTTTCCTCTTCC
CTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA

Translation (898 aa):
MVWDRQTKMEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDE
PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPK
LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI
ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV
ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRS
RTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV
VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM
TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV
GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ
AMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG
DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN
TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF
IFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH