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Report for CCDS7921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7921.1 Public Homo sapiens 11 ATG13 24 110 108 CCDS HistoryNCBI Gene:9776Re-query CCDS DB by CCDS ID:7921.1Re-query CCDS DB by GeneID:9776See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7921.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524625.5 ENSP00000433543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524625.5Link to Ensembl Protein Viewer:ENSP00000433543.1Re-query CCDS DB by Nucleotide ID:ENST00000524625Re-query CCDS DB by Protein ID:ENSP00000433543
Original member Current member EBI ENST00000529655.5 ENSP00000433756.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529655.5Link to Ensembl Protein Viewer:ENSP00000433756.1Re-query CCDS DB by Nucleotide ID:ENST00000529655Re-query CCDS DB by Protein ID:ENSP00000433756
Original member Current member NCBI NM_001205121.2 NP_001192050.1 Accepted alive Link to Nucleotide Sequence:NM_001205121.2Link to Protein Sequence:NP_001192050.1Re-query CCDS DB by Nucleotide ID:NM_001205121Re-query CCDS DB by Protein ID:NP_001192050Link to BLAST:NP_001192050.1
Original member Current member NCBI NM_001346342.2 NP_001333271.1 Accepted alive Link to Nucleotide Sequence:NM_001346342.2Link to Protein Sequence:NP_001333271.1Re-query CCDS DB by Nucleotide ID:NM_001346342Re-query CCDS DB by Protein ID:NP_001333271Link to BLAST:NP_001333271.1
Original member Current member NCBI NM_001346344.2 NP_001333273.1 Accepted alive Link to Nucleotide Sequence:NM_001346344.2Link to Protein Sequence:NP_001333273.1Re-query CCDS DB by Nucleotide ID:NM_001346344Re-query CCDS DB by Protein ID:NP_001333273Link to BLAST:NP_001333273.1
Original member Current member NCBI NM_001346346.2 NP_001333275.1 Accepted alive Link to Nucleotide Sequence:NM_001346346.2Link to Protein Sequence:NP_001333275.1Re-query CCDS DB by Nucleotide ID:NM_001346346Re-query CCDS DB by Protein ID:NP_001333275Link to BLAST:NP_001333275.1
Original member Current member NCBI NM_001346348.2 NP_001333277.1 Accepted alive Link to Nucleotide Sequence:NM_001346348.2Link to Protein Sequence:NP_001333277.1Re-query CCDS DB by Nucleotide ID:NM_001346348Re-query CCDS DB by Protein ID:NP_001333277Link to BLAST:NP_001333277.1
Original member Current member NCBI NM_001346349.2 NP_001333278.1 Accepted alive Link to Nucleotide Sequence:NM_001346349.2Link to Protein Sequence:NP_001333278.1Re-query CCDS DB by Nucleotide ID:NM_001346349Re-query CCDS DB by Protein ID:NP_001333278Link to BLAST:NP_001333278.1
Original member Current member NCBI NM_001346350.2 NP_001333279.1 Accepted alive Link to Nucleotide Sequence:NM_001346350.2Link to Protein Sequence:NP_001333279.1Re-query CCDS DB by Nucleotide ID:NM_001346350Re-query CCDS DB by Protein ID:NP_001333279Link to BLAST:NP_001333279.1
Original member Current member NCBI NM_001346351.2 NP_001333280.1 Accepted alive Link to Nucleotide Sequence:NM_001346351.2Link to Protein Sequence:NP_001333280.1Re-query CCDS DB by Nucleotide ID:NM_001346351Re-query CCDS DB by Protein ID:NP_001333280Link to BLAST:NP_001333280.1
Original member Current member NCBI NM_001346352.2 NP_001333281.1 Accepted alive Link to Nucleotide Sequence:NM_001346352.2Link to Protein Sequence:NP_001333281.1Re-query CCDS DB by Nucleotide ID:NM_001346352Re-query CCDS DB by Protein ID:NP_001333281Link to BLAST:NP_001333281.1
Original member Current member NCBI NM_001346353.2 NP_001333282.1 Accepted alive Link to Nucleotide Sequence:NM_001346353.2Link to Protein Sequence:NP_001333282.1Re-query CCDS DB by Nucleotide ID:NM_001346353Re-query CCDS DB by Protein ID:NP_001333282Link to BLAST:NP_001333282.1
Original member Current member NCBI NM_001346354.2 NP_001333283.1 Accepted alive Link to Nucleotide Sequence:NM_001346354.2Link to Protein Sequence:NP_001333283.1Re-query CCDS DB by Nucleotide ID:NM_001346354Re-query CCDS DB by Protein ID:NP_001333283Link to BLAST:NP_001333283.1
Original member Current member NCBI NM_014741.5 NP_055556.2 Accepted alive Link to Nucleotide Sequence:NM_014741.5Link to Protein Sequence:NP_055556.2Re-query CCDS DB by Nucleotide ID:NM_014741Re-query CCDS DB by Protein ID:NP_055556Link to BLAST:NP_055556.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192050.1 480 O75143-2 480 100% 0 0
NP_001333271.1 480 O75143-2 480 100% 0 0
NP_001333273.1 480 O75143-2 480 100% 0 0
NP_001333275.1 480 O75143-2 480 100% 0 0
NP_001333277.1 480 O75143-2 480 100% 0 0
NP_001333278.1 480 O75143-2 480 100% 0 0
NP_001333279.1 480 O75143-2 480 100% 0 0
NP_001333280.1 480 O75143-2 480 100% 0 0
NP_001333281.1 480 O75143-2 480 100% 0 0
NP_001333282.1 480 O75143-2 480 100% 0 0
NP_001333283.1 480 O75143-2 480 100% 0 0
NP_055556.2 480 O75143-2 480 100% 0 0

Chromosomal Locations for CCDS 7921.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46644292 46644360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645339 46645419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645870 46645989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46649137 46649183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46650177 46650317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46656233 46656273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657095 46657191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657524 46657622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46659392 46659485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46665383 46665519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46667773 46667887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668499 46668576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668794 46668910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46669404 46669532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46672255 46672332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTTATTAAATTTTTTGCCCTCAAGA
CTGTCCAAGTGATTGTCCAGGCTCGGCTTGGTGAAAAGATTTGCACTCGTTCATCATCTTCTCCAACGGG
TTCAGATTGGTTCAACTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCA
GGACAGCTGCCTGCAGTCGGGAGGTCCATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCA
TGGAGCTGGAAATATGGTGTCTTGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGT
GTACAACAGACTGTCATTGCTGCTGAAGTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTC
TCCAGGAAACAAGGGCATGAATATGTCATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCT
TAGGAGAAGGCTTCCAGACAGTTCGTGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTG
TGCTTACAGAATTAACTTGGCATTCATGTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT
ATTATTGATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTG
CTGGTGAGGACACTGGAGTAATATACCCGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTC
CACCTCCCCACCATCCCAGCTGATGGTTCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCT
GTCCATGGTACCCAGGCTGACCAGGAGAGACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTG
CCACACCCTCCAGTAGTGAGGATACTGAAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGA
TGTCTTGGAGACCATCTTTGTCCGAAAAGTGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTG
ACGAGTTTGGATATACCCTTTGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGG
TGAATCCTCCAGATTCCCCAGAGACTGAATCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGG
GGGCAGCAGTGGCAATACCCATGATGACTTTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGAC
ATTCTTCCGATGGACCTGGGGACCTTCTATCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCA
TAGATATTGGAGCACAGTCCATGGCTGAAGACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAA
GAATGTCCGCGAGTTTGATGCCTTTGTGGAAACCCTGCAGTAA

Translation (480 aa):
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALA
GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL
SRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGI
IIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQP
VHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD
ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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