NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44582.1 Public Homo sapiens 11 ATG13 24 110 108 CCDS HistoryNCBI Gene:9776Re-query CCDS DB by CCDS ID:44582.1Re-query CCDS DB by GeneID:9776See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359513.8 ENSP00000352500.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359513.8Link to Ensembl Protein Viewer:ENSP00000352500.4Re-query CCDS DB by Nucleotide ID:ENST00000359513Re-query CCDS DB by Protein ID:ENSP00000352500
Original member Current member EBI ENST00000526508.5 ENSP00000431974.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526508.5Link to Ensembl Protein Viewer:ENSP00000431974.1Re-query CCDS DB by Nucleotide ID:ENST00000526508Re-query CCDS DB by Protein ID:ENSP00000431974
Original member Current member NCBI NM_001142673.3 NP_001136145.1 Accepted alive Link to Nucleotide Sequence:NM_001142673.3Link to Protein Sequence:NP_001136145.1Re-query CCDS DB by Nucleotide ID:NM_001142673Re-query CCDS DB by Protein ID:NP_001136145Link to BLAST:NP_001136145.1
Original member Current member NCBI NM_001205120.2 NP_001192049.1 Accepted alive Link to Nucleotide Sequence:NM_001205120.2Link to Protein Sequence:NP_001192049.1Re-query CCDS DB by Nucleotide ID:NM_001205120Re-query CCDS DB by Protein ID:NP_001192049Link to BLAST:NP_001192049.1
Original member Current member NCBI NM_001346319.2 NP_001333248.1 Accepted alive Link to Nucleotide Sequence:NM_001346319.2Link to Protein Sequence:NP_001333248.1Re-query CCDS DB by Nucleotide ID:NM_001346319Re-query CCDS DB by Protein ID:NP_001333248Link to BLAST:NP_001333248.1
Original member Current member NCBI NM_001346320.2 NP_001333249.1 Accepted alive Link to Nucleotide Sequence:NM_001346320.2Link to Protein Sequence:NP_001333249.1Re-query CCDS DB by Nucleotide ID:NM_001346320Re-query CCDS DB by Protein ID:NP_001333249Link to BLAST:NP_001333249.1
Original member Current member NCBI NM_001346321.2 NP_001333250.1 Accepted alive Link to Nucleotide Sequence:NM_001346321.2Link to Protein Sequence:NP_001333250.1Re-query CCDS DB by Nucleotide ID:NM_001346321Re-query CCDS DB by Protein ID:NP_001333250Link to BLAST:NP_001333250.1
Original member Current member NCBI NM_001346322.2 NP_001333251.1 Accepted alive Link to Nucleotide Sequence:NM_001346322.2Link to Protein Sequence:NP_001333251.1Re-query CCDS DB by Nucleotide ID:NM_001346322Re-query CCDS DB by Protein ID:NP_001333251Link to BLAST:NP_001333251.1
Original member Current member NCBI NM_001346323.2 NP_001333252.1 Accepted alive Link to Nucleotide Sequence:NM_001346323.2Link to Protein Sequence:NP_001333252.1Re-query CCDS DB by Nucleotide ID:NM_001346323Re-query CCDS DB by Protein ID:NP_001333252Link to BLAST:NP_001333252.1
Original member Current member NCBI NM_001346324.2 NP_001333253.1 Accepted alive Link to Nucleotide Sequence:NM_001346324.2Link to Protein Sequence:NP_001333253.1Re-query CCDS DB by Nucleotide ID:NM_001346324Re-query CCDS DB by Protein ID:NP_001333253Link to BLAST:NP_001333253.1
Original member Current member NCBI NM_001346325.2 NP_001333254.1 Accepted alive Link to Nucleotide Sequence:NM_001346325.2Link to Protein Sequence:NP_001333254.1Re-query CCDS DB by Nucleotide ID:NM_001346325Re-query CCDS DB by Protein ID:NP_001333254Link to BLAST:NP_001333254.1
Original member Current member NCBI NM_001346326.2 NP_001333255.1 Accepted alive Link to Nucleotide Sequence:NM_001346326.2Link to Protein Sequence:NP_001333255.1Re-query CCDS DB by Nucleotide ID:NM_001346326Re-query CCDS DB by Protein ID:NP_001333255Link to BLAST:NP_001333255.1
Original member Current member NCBI NM_001346327.2 NP_001333256.1 Accepted alive Link to Nucleotide Sequence:NM_001346327.2Link to Protein Sequence:NP_001333256.1Re-query CCDS DB by Nucleotide ID:NM_001346327Re-query CCDS DB by Protein ID:NP_001333256Link to BLAST:NP_001333256.1
Original member Current member NCBI NM_001346328.2 NP_001333257.1 Accepted alive Link to Nucleotide Sequence:NM_001346328.2Link to Protein Sequence:NP_001333257.1Re-query CCDS DB by Nucleotide ID:NM_001346328Re-query CCDS DB by Protein ID:NP_001333257Link to BLAST:NP_001333257.1
Original member Current member NCBI NM_001346329.2 NP_001333258.1 Accepted alive Link to Nucleotide Sequence:NM_001346329.2Link to Protein Sequence:NP_001333258.1Re-query CCDS DB by Nucleotide ID:NM_001346329Re-query CCDS DB by Protein ID:NP_001333258Link to BLAST:NP_001333258.1
Original member Current member NCBI NM_001346330.2 NP_001333259.1 Accepted alive Link to Nucleotide Sequence:NM_001346330.2Link to Protein Sequence:NP_001333259.1Re-query CCDS DB by Nucleotide ID:NM_001346330Re-query CCDS DB by Protein ID:NP_001333259Link to BLAST:NP_001333259.1
Original member Current member NCBI NM_001346331.2 NP_001333260.1 Accepted alive Link to Nucleotide Sequence:NM_001346331.2Link to Protein Sequence:NP_001333260.1Re-query CCDS DB by Nucleotide ID:NM_001346331Re-query CCDS DB by Protein ID:NP_001333260Link to BLAST:NP_001333260.1
Original member Current member NCBI NM_001346332.2 NP_001333261.1 Accepted alive Link to Nucleotide Sequence:NM_001346332.2Link to Protein Sequence:NP_001333261.1Re-query CCDS DB by Nucleotide ID:NM_001346332Re-query CCDS DB by Protein ID:NP_001333261Link to BLAST:NP_001333261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136145.1 517 O75143-1 517 100% 0 0
NP_001192049.1 517 O75143-1 517 100% 0 0
NP_001333248.1 517 O75143-1 517 100% 0 0
NP_001333249.1 517 O75143-1 517 100% 0 0
NP_001333250.1 517 O75143-1 517 100% 0 0
NP_001333251.1 517 O75143-1 517 100% 0 0
NP_001333252.1 517 O75143-1 517 100% 0 0
NP_001333253.1 517 O75143-1 517 100% 0 0
NP_001333254.1 517 O75143-1 517 100% 0 0
NP_001333255.1 517 O75143-1 517 100% 0 0
NP_001333256.1 517 O75143-1 517 100% 0 0
NP_001333257.1 517 O75143-1 517 100% 0 0
NP_001333258.1 517 O75143-1 517 100% 0 0
NP_001333259.1 517 O75143-1 517 100% 0 0
NP_001333260.1 517 O75143-1 517 100% 0 0
NP_001333261.1 517 O75143-1 517 100% 0 0

Chromosomal Locations for CCDS 44582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46644292 46644360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645339 46645419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46645870 46645989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46649137 46649183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46650177 46650317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46656233 46656273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657095 46657191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46657524 46657622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46659392 46659485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46664849 46664959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46665383 46665519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46667773 46667887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668499 46668576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46668794 46668910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46669404 46669532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46672255 46672332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTTATTAAATTTTTTGCCCTCAAGA
CTGTCCAAGTGATTGTCCAGGCTCGGCTTGGTGAAAAGATTTGCACTCGTTCATCATCTTCTCCAACGGG
TTCAGATTGGTTCAACTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCA
GGACAGCTGCCTGCAGTCGGGAGGTCCATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCA
TGGAGCTGGAAATATGGTGTCTTGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGT
GTACAACAGACTGTCATTGCTGCTGAAGTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTC
TCCAGGAAACAAGGGCATGAATATGTCATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCT
TAGGAGAAGGCTTCCAGACAGTTCGTGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTG
TGCTTACAGAATTAACTTGGCATTCATGTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT
ATTATTGATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTG
CTGGTGAGGACACTGGAGTAATATACCCGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTC
CACCTCCCCACCATCCCAGCTCTCAAGCTCTCGCCTTTCCTATCAGCCTGCTGCCCTGGGCGTTGGATCA
GCTGACCTGGCTTATCCAGTAGTGTTTGCTGCTGGCTTAAATGCTACACACCCTCACCAGCTGATGGTTC
CTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCTGTCCATGGTACCCAGGCTGACCAGGAGAG
ACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTGCCACACCCTCCAGTAGTGAGGATACTGAA
ACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGATGTCTTGGAGACCATCTTTGTCCGAAAAG
TGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTGACGAGTTTGGATATACCCTTTGCCATGTT
TGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGGTGAATCCTCCAGATTCCCCAGAGACTGAA
TCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGGGGGCAGCAGTGGCAATACCCATGATGACT
TTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGACATTCTTCCGATGGACCTGGGGACCTTCTA
TCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCATAGATATTGGAGCACAGTCCATGGCTGAA
GACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAAGAATGTCCGCGAGTTTGATGCCTTTGTGG
AAACCCTGCAGTAA

Translation (517 aa):
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALA
GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL
SRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGI
IIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYQPAALGVGS
ADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPVHGTQADQERLATCTPSDRTHCAATPSSSEDTE
TVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPETE
SPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAE
DLDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH