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Report for CCDS25347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25347.1 Public Mus musculus 11 Pnmt 23 108 98 CCDS HistoryNCBI Gene:18948Re-query CCDS DB by CCDS ID:25347.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041301.7 ENSMUSP00000035549.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041301.7Link to Ensembl Protein Viewer:ENSMUSP00000035549.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041301Re-query CCDS DB by Protein ID:ENSMUSP00000035549
Original member Current member NCBI NM_008890.3 NP_032916.1 Accepted alive Link to Nucleotide Sequence:NM_008890.3Link to Protein Sequence:NP_032916.1Re-query CCDS DB by Nucleotide ID:NM_008890Re-query CCDS DB by Protein ID:NP_032916Link to BLAST:NP_032916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032916.1 295 P40935 295 100% 0 0

Chromosomal Locations for CCDS 25347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98386632 98386866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98387337 98387544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98387653 98388097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAACGGTGGCTCAGACCTGAAGCACGCTACAGGGAGTGGCTCAGACCCGAAGCACGCTGCAGAGATGG
ACCCTGACTCCGACGCTGGCCAGGTAGCTGTCGCCTTGGCTTACCAGCGCTTCGAGCCCCGCGCCTATCT
CCGCAACAACTACGCGCCTCCTCGTGGAGACCTGAGCAACCCTGATGGCGTCGGGCCTTGGAAGCTGCGC
TGCATGGCACAAGTCTTTGCTACCGGTGAGGTGTCGGGACGGGTTCTCATTGATATTGGCTCCGGCCCCA
CCATATATCAGCTGCTCAGTGCCTGTGCCCACTTTGAGGACATCACCATGACAGACTTCTTGGAAGTCAA
CCGTCAGGAGCTGGGACTCTGGCTGCGAGAGGAGCCAGGAGCCTTTGACTGGAGTGTGTATAGTCAGCAT
GCCTGCCTCATTGAGGACAAGGGTGAGTCCTGGCAGGAGAAAGAACGCCAGCTTCGAGCGAGGGTGAAGC
GAGTCCTGCCTATCGATGTGCACAAGCCCCAGCCCCTGGGAACTCCCAGTCTGGTCCCTCTGCCTGCCGA
CGCCTTGGTCTCTGCCTTCTGCCTGGAGGCTGTGAGCCCAGATCTTACTAGCTTCCAGCGGGCTTTGCAT
CACATCACCACACTGCTGAGGCCCGGGGGTCATCTCCTCCTCATTGGGGCCCTGGAGGAGTCCTGGTACC
TTGCTGGGGAGGCCAGGCTGTCTGTGGTGCCAGTGTCTGAGGAGGAGGTGAGGGAGGCCCTGGTCCTTGG
TGGTTACGAGGTCCGAGAGCTTCGCACCTACATCATGCCTGCCCACCTCTGCACGGGGGTAGATGATGTC
AAAGGCATCTTCTTTGCCTGGGCCCAGAAGATGGAGGTGCAGGTGTGA

Translation (295 aa):
MNGGSDLKHATGSGSDPKHAAEMDPDSDAGQVAVALAYQRFEPRAYLRNNYAPPRGDLSNPDGVGPWKLR
CMAQVFATGEVSGRVLIDIGSGPTIYQLLSACAHFEDITMTDFLEVNRQELGLWLREEPGAFDWSVYSQH
ACLIEDKGESWQEKERQLRARVKRVLPIDVHKPQPLGTPSLVPLPADALVSAFCLEAVSPDLTSFQRALH
HITTLLRPGGHLLLIGALEESWYLAGEARLSVVPVSEEEVREALVLGGYEVRELRTYIMPAHLCTGVDDV
KGIFFAWAQKMEVQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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