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Report for CCDS50075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50075.1 Public Mus musculus 17 Btnl1 23 108 98 CCDS HistoryNCBI Gene:100038862Re-query CCDS DB by CCDS ID:50075.1Re-query CCDS DB by GeneID:100038862See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080254.6 ENSMUSP00000079140.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080254.6Link to Ensembl Protein Viewer:ENSMUSP00000079140.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080254Re-query CCDS DB by Protein ID:ENSMUSP00000079140
Original member Current member NCBI NM_001111094.1 NP_001104564.1 Accepted alive Link to Nucleotide Sequence:NM_001111094.1Link to Protein Sequence:NP_001104564.1Re-query CCDS DB by Nucleotide ID:NM_001111094Re-query CCDS DB by Protein ID:NP_001104564Link to BLAST:NP_001104564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104564.1 509 Q7TST0 509 100% 0 0

Chromosomal Locations for CCDS 50075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34377895 34377976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34379494 34379847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34380961 34381242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34381350 34381550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34382106 34382126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34382241 34382267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34382462 34382488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34384361 34384387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34385268 34385776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGATGAAGGGCTCCCCCTCCGTCCCTCCAGCTGGTTGTCTCCTCCCTCTGCTCCTCCTGCTGTTTACCG
GAGTCTCTGGAGAAGTGTCTTGGTTTTCTGTGAAGGGACCAGCTGAGCCCATCACTGTCCTGCTGGGGAC
TGAAGCCACCCTGCCCTGCCAGCTGTCTCCTGAACAGAGTGCAGCTCGCATGCACATCCGATGGTACCGT
GCCCAGCCCACCCCTGCTGTGCTGGTGTTCCACAACGGACAGGAGCAGGGAGAGGTGCAGATGCCGGAAT
ACAGGGGCAGGACCCAGATGGTGAGACAAGCCATTGACATGGGAAGTGTGGCTCTGCAGATACAGCAGGT
CCAGGCCTCTGATGATGGCCTGTACCACTGTCAGTTTACAGATGGCTTCACCTCCCAAGAGGTCTCCATG
GAGCTTCGAGTCATAGGTTTAGGCTCTGCCCCTCTTGTTCACATGACAGGACCTGAGAATGATGGGATCC
GAGTGTTGTGCTCCTCAAGTGGCTGGTTCCCAAAACCCAAAGTGCAATGGAGAGACACCTCCGGGAACAT
GCTACTGTCCTCCTCTGAGTTGCAGACCCAAGACAGAGAAGGGCTCTTCCAGGTGGAAGTGTCTCTTTTG
GTCACAGATAGAGCTATTGGCAATGTGATCTGCTCCATCCAAAATCCCATGTATGACCAGGAGAAATCGA
AGGCCATCCTCCTCCCAGAGCCCTTCTTCCCCAAGACGTGTCCATGGAAAGTAGCCCTGGTTTGTTCTGT
CCTCATACTATTGGTCCTGCTCGGTGGGATCAGCCTTGGAATCTGGAAAGAACATCAAGTCAAAAGGAGA
GAAATTAAAAAATGGTCAAAGGAACATGAAGAAATGCTTCTGTTGAAGAAGGGGACAAAATCTGTACTGA
AGATCAGAGATGACCTCCAGGCCGACCTAGATCGGAGGAAGGCGCTGTACAAAGAAGACTGGAAGAAGGC
CTTGCTGTACCCTGACTGGAGGAAGGAGCTGTTCCAGGAGGCTCCTGTGAGGATAAATTATGAAATGCCT
GACCAGGACAAGACAGACTCAAGGACAGAAGAGAACAGAGGTGAGGAGACTGTCAGCAGCTCACAAGTAG
ACCACAACCTCATCACACTCTCCCAGGAAGGCTTCATGTTGGGAAGATACTACTGGGAGGTGGATGTCAA
GGACACAGAGGAGTGGACACTAGGAGTTTATGAGCTGTGCACTCAGGATGCATCACTTACAGACCCCTTG
AGGAAATTCAGAGTCCTGGAAAAGAATGGAGATGGATACAGGGCTCTTGACTTCTGTTCCCAAAACATTA
ATTCGGAAGAACCTCTGCAACTGAAGACACGTCCGCTGAAGATCGCCATCTTCTTGGATCAGGAAGACAA
TGACCTCTCTTTCTACAACATGACCGATGAGACACACATCTTTTCCTTTGCCCAGGTCCCTTTCTTGGGA
TCACCCTATCCTTACTTCACACGTAATTCCATGGGGCTCTCTGCAACAGCACAGCCCTAA

Translation (509 aa):
MMKGSPSVPPAGCLLPLLLLLFTGVSGEVSWFSVKGPAEPITVLLGTEATLPCQLSPEQSAARMHIRWYR
AQPTPAVLVFHNGQEQGEVQMPEYRGRTQMVRQAIDMGSVALQIQQVQASDDGLYHCQFTDGFTSQEVSM
ELRVIGLGSAPLVHMTGPENDGIRVLCSSSGWFPKPKVQWRDTSGNMLLSSSELQTQDREGLFQVEVSLL
VTDRAIGNVICSIQNPMYDQEKSKAILLPEPFFPKTCPWKVALVCSVLILLVLLGGISLGIWKEHQVKRR
EIKKWSKEHEEMLLLKKGTKSVLKIRDDLQADLDRRKALYKEDWKKALLYPDWRKELFQEAPVRINYEMP
DQDKTDSRTEENRGEETVSSSQVDHNLITLSQEGFMLGRYYWEVDVKDTEEWTLGVYELCTQDASLTDPL
RKFRVLEKNGDGYRALDFCSQNINSEEPLQLKTRPLKIAIFLDQEDNDLSFYNMTDETHIFSFAQVPFLG
SPYPYFTRNSMGLSATAQP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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