NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45093.1 Public Homo sapiens 14 AP4S1 24 110 108 CCDS HistoryNCBI Gene:11154Re-query CCDS DB by CCDS ID:45093.1Re-query CCDS DB by GeneID:11154See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542754.7 ENSP00000438170.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542754.7Link to Ensembl Protein Viewer:ENSP00000438170.2Re-query CCDS DB by Nucleotide ID:ENST00000542754Re-query CCDS DB by Protein ID:ENSP00000438170
Original member Current member EBI ENST00000557346.6 ENSP00000451479.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557346.6Link to Ensembl Protein Viewer:ENSP00000451479.2Re-query CCDS DB by Nucleotide ID:ENST00000557346Re-query CCDS DB by Protein ID:ENSP00000451479
Original member Current member EBI ENST00000555417.6 ENSP00000451609.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555417.6Link to Ensembl Protein Viewer:ENSP00000451609.2Re-query CCDS DB by Nucleotide ID:ENST00000555417Re-query CCDS DB by Protein ID:ENSP00000451609
Original member Current member NCBI NM_001128126.3 NP_001121598.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128126.3Link to Protein Sequence:NP_001121598.1Re-query CCDS DB by Nucleotide ID:NM_001128126Re-query CCDS DB by Protein ID:NP_001121598Link to BLAST:NP_001121598.1
Original member Current member NCBI NM_001254728.2 NP_001241657.1 Accepted alive Link to Nucleotide Sequence:NM_001254728.2Link to Protein Sequence:NP_001241657.1Re-query CCDS DB by Nucleotide ID:NM_001254728Re-query CCDS DB by Protein ID:NP_001241657Link to BLAST:NP_001241657.1
Original member Current member NCBI NM_001254729.2 NP_001241658.1 Accepted alive Link to Nucleotide Sequence:NM_001254729.2Link to Protein Sequence:NP_001241658.1Re-query CCDS DB by Nucleotide ID:NM_001254729Re-query CCDS DB by Protein ID:NP_001241658Link to BLAST:NP_001241658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121598.1 144 Q9Y587-1 144 100% 0 0
NP_001241657.1 144 Q9Y587-1 144 100% 0 0
NP_001241658.1 144 Q9Y587-1 144 100% 0 0

Chromosomal Locations for CCDS 45093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31066197 31066334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31069843 31069929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31072905 31072973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31080573 31080584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31092907 31093035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGATAAAATTTTTCCTCATGGTGAATAAACAAGGGCAGACTCGACTTTCTAAGTACTATGAACATGTGG
ATATTAATAAGCGTACACTTCTGGAAACAGAAGTCATAAAGAGCTGTCTCTCTCGATCCAATGAACAATG
CTCTTTCATTGAATATAAGGATTTTAAGCTGATATATCGGCAGTATGCAGCTCTCTTCATTGTGGTTGGA
GTTAATGACACTGAGAACGAGATGGCTATTTATGAATTCATTCATAACTTTGTGGAAGTTTTAGATGAGT
ATTTCAGCCGAGTGAGTGAATTAGATATAATGTTTAATTTGGATAAAGTACACATCATTTTGGATGAGAT
GGTGTTAAATGGCTGCATTGTGGAAACTAACAGGGCAAGAATTCTTGCCCCTCTACTAATTCTTGATAAG
ATGTCAGAAAGCTGA

Translation (144 aa):
MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVG
VNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDK
MSES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH