NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10677.1 Public Homo sapiens 16 MYL11 24 110 108 CCDS HistoryNCBI Gene:29895Re-query CCDS DB by CCDS ID:10677.1Re-query CCDS DB by GeneID:29895See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322861.12 ENSP00000325239.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322861.12Link to Ensembl Protein Viewer:ENSP00000325239.7Re-query CCDS DB by Nucleotide ID:ENST00000322861Re-query CCDS DB by Protein ID:ENSP00000325239
Original member Current member NCBI NM_001324458.2 NP_001311387.1 Accepted alive Link to Nucleotide Sequence:NM_001324458.2Link to Protein Sequence:NP_001311387.1Re-query CCDS DB by Nucleotide ID:NM_001324458Re-query CCDS DB by Protein ID:NP_001311387Link to BLAST:NP_001311387.1
Original member Current member NCBI NM_001324459.2 NP_001311388.1 Accepted alive Link to Nucleotide Sequence:NM_001324459.2Link to Protein Sequence:NP_001311388.1Re-query CCDS DB by Nucleotide ID:NM_001324459Re-query CCDS DB by Protein ID:NP_001311388Link to BLAST:NP_001311388.1
Original member Current member NCBI NM_013292.5 NP_037424.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013292.5Link to Protein Sequence:NP_037424.2Re-query CCDS DB by Nucleotide ID:NM_013292Re-query CCDS DB by Protein ID:NP_037424Link to BLAST:NP_037424.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311387.1 169 Q96A32 169 100% 0 0
NP_001311388.1 169 Q96A32 169 100% 0 0
NP_037424.2 169 Q96A32 169 100% 0 0

Chromosomal Locations for CCDS 10677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30374858 30374860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30375820 30375912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30376145 30376220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30376423 30376527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30376620 30376698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30377654 30377702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30377796 30377900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGCACCCAAGAGGGCCAAGAGAAGGACAGTAGAGGGCGGAAGCTCCAGCGTCTTCTCCATGTTCGACC
AGACTCAGATCCAGGAGTTCAAAGAGGCCTTCACTGTGATCGACCAGAACCGTGATGGTATTATAGACAA
GGAGGACCTTCGGGACACCTTCGCAGCCATGGGCCGCCTCAATGTGAAGAATGAGGAGTTGGATGCCATG
ATGAAGGAAGCCAGCGGTCCCATCAACTTCACCGTCTTCCTGACCATGTTCGGGGAGAAGCTCAAGGGTG
CCGACCCTGAGGATGTGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGGAAAGGGCACCATCAAGAA
GAAGTTCCTGGAGGAGCTGCTGACCACGCAGTGTGACCGCTTCTCCCAGGAGGAGATCAAGAACATGTGG
GCGGCCTTCCCCCCCGACGTGGGCGGCAACGTCGACTACAAAAACATCTGCTACGTCATCACGCACGGCG
ACGCCAAGGACCAGGAGTAG

Translation (169 aa):
MAPKRAKRRTVEGGSSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAM
MKEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMW
AAFPPDVGGNVDYKNICYVITHGDAKDQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH