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Report for CCDS6405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6405.1 Public Homo sapiens 8 EEF1D 24 110 108 CCDS HistoryNCBI Gene:1936Re-query CCDS DB by CCDS ID:6405.1Re-query CCDS DB by GeneID:1936See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317198.10 ENSP00000317399.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317198.10Link to Ensembl Protein Viewer:ENSP00000317399.6Re-query CCDS DB by Nucleotide ID:ENST00000317198Re-query CCDS DB by Protein ID:ENSP00000317399
Original member Current member EBI ENST00000395119.7 ENSP00000378551.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395119.7Link to Ensembl Protein Viewer:ENSP00000378551.3Re-query CCDS DB by Nucleotide ID:ENST00000395119Re-query CCDS DB by Protein ID:ENSP00000378551
Original member Current member EBI ENST00000419152.7 ENSP00000388261.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419152.7Link to Ensembl Protein Viewer:ENSP00000388261.2Re-query CCDS DB by Nucleotide ID:ENST00000419152Re-query CCDS DB by Protein ID:ENSP00000388261
Original member Current member EBI ENST00000533494.6 ENSP00000433412.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533494.6Link to Ensembl Protein Viewer:ENSP00000433412.2Re-query CCDS DB by Nucleotide ID:ENST00000533494Re-query CCDS DB by Protein ID:ENSP00000433412
Original member Current member EBI ENST00000534380.6 ENSP00000433611.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534380.6Link to Ensembl Protein Viewer:ENSP00000433611.2Re-query CCDS DB by Nucleotide ID:ENST00000534380Re-query CCDS DB by Protein ID:ENSP00000433611
Original member Current member EBI ENST00000531218.6 ENSP00000434448.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531218.6Link to Ensembl Protein Viewer:ENSP00000434448.2Re-query CCDS DB by Nucleotide ID:ENST00000531218Re-query CCDS DB by Protein ID:ENSP00000434448
Original member Current member EBI ENST00000529272.5 ENSP00000434872.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529272.5Link to Ensembl Protein Viewer:ENSP00000434872.1Re-query CCDS DB by Nucleotide ID:ENST00000529272Re-query CCDS DB by Protein ID:ENSP00000434872
Original member Current member EBI ENST00000530191.6 ENSP00000436542.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530191.6Link to Ensembl Protein Viewer:ENSP00000436542.2Re-query CCDS DB by Nucleotide ID:ENST00000530191Re-query CCDS DB by Protein ID:ENSP00000436542
Original member Current member EBI ENST00000530445.6 ENSP00000436933.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530445.6Link to Ensembl Protein Viewer:ENSP00000436933.2Re-query CCDS DB by Nucleotide ID:ENST00000530445Re-query CCDS DB by Protein ID:ENSP00000436933
Original member Current member NCBI NM_001130055.4 NP_001123527.1 Accepted alive Link to Nucleotide Sequence:NM_001130055.4Link to Protein Sequence:NP_001123527.1Re-query CCDS DB by Nucleotide ID:NM_001130055Re-query CCDS DB by Protein ID:NP_001123527Link to BLAST:NP_001123527.1
Original member Current member NCBI NM_001130057.4 NP_001123529.1 Accepted alive Link to Nucleotide Sequence:NM_001130057.4Link to Protein Sequence:NP_001123529.1Re-query CCDS DB by Nucleotide ID:NM_001130057Re-query CCDS DB by Protein ID:NP_001123529Link to BLAST:NP_001123529.1
Original member Current member NCBI NM_001289950.4 NP_001276879.1 Accepted alive Link to Nucleotide Sequence:NM_001289950.4Link to Protein Sequence:NP_001276879.1Re-query CCDS DB by Nucleotide ID:NM_001289950Re-query CCDS DB by Protein ID:NP_001276879Link to BLAST:NP_001276879.1
Original member Current member NCBI NM_001960.7 NP_001951.2 Accepted alive Link to Nucleotide Sequence:NM_001960.7Link to Protein Sequence:NP_001951.2Re-query CCDS DB by Nucleotide ID:NM_001960Re-query CCDS DB by Protein ID:NP_001951Link to BLAST:NP_001951.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123527.1 281 P29692-1 281 100% 0 0
NP_001123529.1 281 P29692-1 281 100% 0 0
NP_001276879.1 281 P29692-1 281 100% 0 0
NP_001951.2 281 P29692-1 281 100% 0 0

Chromosomal Locations for CCDS 6405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143579792 143579830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143580012 143580206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143580506 143580727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143581054 143581154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143581229 143581328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143586219 143586290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143586729 143586845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCTACAAACTTCCTAGCACATGAGAAGATCTGGTTCGACAAGTTCAAATATGACGACGCAGAAAGGA
GATTCTACGAGCAGATGAACGGGCCTGTGGCAGGTGCCTCCCGCCAGGAGAACGGCGCCAGCGTGATCCT
CCGTGACATTGCGAGAGCCAGAGAGAACATCCAGAAATCCCTGGCTGGAAGCTCAGGCCCCGGGGCCTCC
AGCGGCACCAGCGGAGACCACGGTGAGCTCGTCGTCCGGATTGCCAGTCTGGAAGTGGAGAACCAGAGTC
TGCGTGGCGTGGTACAGGAGCTGCAGCAGGCCATCTCCAAGCTGGAGGCCCGGCTGAACGTGCTGGAGAA
GAGCTCGCCTGGCCACCGGGCCACGGCCCCACAGACCCAGCACGTATCTCCCATGCGCCAAGTGGAGCCC
CCAGCCAAGAAGCCAGCCACACCAGCAGAGGATGACGAGGATGATGACATTGACCTGTTTGGCAGTGACA
ATGAGGAGGAGGACAAGGAGGCGGCACAGCTGCGGGAGGAGCGGCTACGGCAGTACGCGGAGAAGAAGGC
CAAGAAGCCTGCACTGGTGGCCAAGTCCTCCATCCTGCTGGATGTCAAGCCTTGGGATGATGAGACGGAC
ATGGCCCAGCTGGAGGCCTGTGTGCGCTCTATCCAGCTGGACGGGCTGGTCTGGGGGGCTTCCAAGCTGG
TGCCCGTGGGCTACGGTATCCGGAAGCTACAGATTCAGTGTGTGGTGGAGGACGACAAGGTGGGGACAGA
CTTGCTGGAGGAGGAGATCACCAAGTTTGAGGAGCACGTGCAGAGTGTCGATATCGCAGCTTTCAACAAG
ATCTGA

Translation (281 aa):
MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGAS
SGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEP
PAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
MAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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