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Report for CCDS7721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7721.1 Public Homo sapiens 11 TSPAN4 24 110 108 CCDS HistoryNCBI Gene:7106Re-query CCDS DB by CCDS ID:7721.1Re-query CCDS DB by GeneID:7106See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7721.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397397.7 ENSP00000380552.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397397.7Link to Ensembl Protein Viewer:ENSP00000380552.2Re-query CCDS DB by Nucleotide ID:ENST00000397397Re-query CCDS DB by Protein ID:ENSP00000380552
Original member Current member EBI ENST00000397404.5 ENSP00000380553.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397404.5Link to Ensembl Protein Viewer:ENSP00000380553.1Re-query CCDS DB by Nucleotide ID:ENST00000397404Re-query CCDS DB by Protein ID:ENSP00000380553
Original member Current member EBI ENST00000397406.5 ENSP00000380554.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397406.5Link to Ensembl Protein Viewer:ENSP00000380554.1Re-query CCDS DB by Nucleotide ID:ENST00000397406Re-query CCDS DB by Protein ID:ENSP00000380554
Original member Current member EBI ENST00000397408.5 ENSP00000380555.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397408.5Link to Ensembl Protein Viewer:ENSP00000380555.1Re-query CCDS DB by Nucleotide ID:ENST00000397408Re-query CCDS DB by Protein ID:ENSP00000380555
Original member Current member EBI ENST00000397411.6 ENSP00000380558.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397411.6Link to Ensembl Protein Viewer:ENSP00000380558.2Re-query CCDS DB by Nucleotide ID:ENST00000397411Re-query CCDS DB by Protein ID:ENSP00000380558
Original member Current member EBI ENST00000409543.6 ENSP00000386513.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409543.6Link to Ensembl Protein Viewer:ENSP00000386513.2Re-query CCDS DB by Nucleotide ID:ENST00000409543Re-query CCDS DB by Protein ID:ENSP00000386513
Original member Current member NCBI NM_001025234.2 NP_001020405.1 Accepted alive Link to Nucleotide Sequence:NM_001025234.2Link to Protein Sequence:NP_001020405.1Re-query CCDS DB by Nucleotide ID:NM_001025234Re-query CCDS DB by Protein ID:NP_001020405Link to BLAST:NP_001020405.1
Original member Current member NCBI NM_001025235.2 NP_001020406.1 Accepted alive Link to Nucleotide Sequence:NM_001025235.2Link to Protein Sequence:NP_001020406.1Re-query CCDS DB by Nucleotide ID:NM_001025235Re-query CCDS DB by Protein ID:NP_001020406Link to BLAST:NP_001020406.1
Original member Current member NCBI NM_001025236.2 NP_001020407.1 Accepted alive Link to Nucleotide Sequence:NM_001025236.2Link to Protein Sequence:NP_001020407.1Re-query CCDS DB by Nucleotide ID:NM_001025236Re-query CCDS DB by Protein ID:NP_001020407Link to BLAST:NP_001020407.1
Original member Current member NCBI NM_001025237.2 NP_001020408.1 Accepted alive Link to Nucleotide Sequence:NM_001025237.2Link to Protein Sequence:NP_001020408.1Re-query CCDS DB by Nucleotide ID:NM_001025237Re-query CCDS DB by Protein ID:NP_001020408Link to BLAST:NP_001020408.1
Original member Current member NCBI NM_001025238.2 NP_001020409.1 Accepted alive Link to Nucleotide Sequence:NM_001025238.2Link to Protein Sequence:NP_001020409.1Re-query CCDS DB by Nucleotide ID:NM_001025238Re-query CCDS DB by Protein ID:NP_001020409Link to BLAST:NP_001020409.1
Original member Current member NCBI NM_003271.5 NP_003262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003271.5Link to Protein Sequence:NP_003262.1Re-query CCDS DB by Nucleotide ID:NM_003271Re-query CCDS DB by Protein ID:NP_003262Link to BLAST:NP_003262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020405.1 238 O14817 238 100% 0 0
NP_001020406.1 238 O14817 238 100% 0 0
NP_001020407.1 238 O14817 238 100% 0 0
NP_001020408.1 238 O14817 238 100% 0 0
NP_001020409.1 238 O14817 238 100% 0 0
NP_003262.1 238 O14817 238 100% 0 0

Chromosomal Locations for CCDS 7721.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 850305 850367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 862550 862741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 864437 864511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865513 865614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865694 865825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865918 866001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 866562 866630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGCGCGCCTGCCTCCAGGCCGTCAAGTACCTCATGTTCGCCTTCAACCTGCTCTTCTGGCTGGGAG
GCTGTGGCGTGCTGGGTGTCGGCATCTGGCTGGCCGCCACACAGGGGAGCTTCGCCACGCTGTCCTCTTC
CTTCCCGTCCCTGTCGGCTGCCAACTTGCTCATCATCACCGGCGCCTTTGTCATGGCCATCGGCTTCGTG
GGCTGCCTGGGTGCCATCAAGGAGAACAAGTGCCTCCTGCTCACTTTCTTCCTGCTGCTGCTGCTGGTGT
TCCTGCTGGAGGCCACCATCGCCATCCTCTTCTTCGCCTACACGGACAAGATTGACAGGTATGCCCAGCA
AGACCTGAAGAAAGGCTTGCACCTGTACGGCACGCAGGGCAACGTGGGCCTCACCAACGCCTGGAGCATC
ATCCAGACCGACTTCCGCTGCTGTGGCGTCTCCAACTACACTGACTGGTTCGAGGTGTACAACGCCACGC
GGGTACCTGACTCCTGCTGCTTGGAGTTCAGTGAGAGCTGTGGGCTGCACGCCCCCGGCACCTGGTGGAA
GGCGCCGTGCTACGAGACGGTGAAGGTGTGGCTTCAGGAGAACCTGCTGGCTGTGGGCATCTTTGGGCTG
TGCACGGCGCTGGTGCAGATCCTGGGCCTGACCTTCGCCATGACCATGTACTGCCAAGTGGTCAAGGCAG
ACACCTACTGCGCGTAG

Translation (238 aa):
MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGFV
GCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQGNVGLTNAWSI
IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFGL
CTALVQILGLTFAMTMYCQVVKADTYCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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