NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47052.1 Public Homo sapiens 4 OCIAD1 24 110 108 CCDS HistoryNCBI Gene:54940Re-query CCDS DB by CCDS ID:47052.1Re-query CCDS DB by GeneID:54940See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444354.6 ENSP00000399656.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444354.6Link to Ensembl Protein Viewer:ENSP00000399656.2Re-query CCDS DB by Nucleotide ID:ENST00000444354Re-query CCDS DB by Protein ID:ENSP00000399656
Original member Current member EBI ENST00000425583.6 ENSP00000416943.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425583.6Link to Ensembl Protein Viewer:ENSP00000416943.2Re-query CCDS DB by Nucleotide ID:ENST00000425583Re-query CCDS DB by Protein ID:ENSP00000416943
Original member Current member NCBI NM_001079840.3 NP_001073309.1 Accepted alive Link to Nucleotide Sequence:NM_001079840.3Link to Protein Sequence:NP_001073309.1Re-query CCDS DB by Nucleotide ID:NM_001079840Re-query CCDS DB by Protein ID:NP_001073309Link to BLAST:NP_001073309.1
Original member Current member NCBI NM_001079842.3 NP_001073311.2 Accepted alive Link to Nucleotide Sequence:NM_001079842.3Link to Protein Sequence:NP_001073311.2Re-query CCDS DB by Nucleotide ID:NM_001079842Re-query CCDS DB by Protein ID:NP_001073311Link to BLAST:NP_001073311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073309.1 194 Q9NX40-4 194 100% 0 0
NP_001073311.2 194 Q9NX40-4 194 100% 0 0

Chromosomal Locations for CCDS 47052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48832625 48832682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48833401 48833481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48842636 48842689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48848399 48848446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48849947 48850082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48851806 48851975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48860725 48860762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAATGGGAGGGCTGATTTTCGAGAGCCGAATGCAGAGGTTCCAAGACCAATTCCCCACATAGGGCCTG
ATTACATTCCAACAGAGGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCTTCTGGTTCAGATC
TGTGCCTTTGGCTGCAACAAGTATGTTGATTACTCAAGGATTAATTAGTAAAGGAATACTTTCAAGTCAT
CCCAAATATGGTTCCATCCCTAAACTTATACTTGCTTGTATCATGGGATACTTTGCTGGAAAACTTTCTT
ATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTTGAAAATTCCCCCCTTGGAGAAGCTTTACGATCAGG
ACAAGCACGACGATCTTCACCACCTGGGCACTATTATCAAAAGTCAAAATATGACTCAAGTGTGAGTGGT
CAATCATCTTTTGTGACATCCCCAGCAGCAGACAACATAGAAATGCTTCCTCATTATGAGCCAATTCCAT
TCAGTTCTTCTATGAATGAATCTGCTCCCACTGGTATTACTGATCATATTGTCCAAGTCAAAGTAAACAA
GTATGGAGATACTTGGGATGAGTGA

Translation (194 aa):
MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSH
PKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQARRSSPPGHYYQKSKYDSSVSG
QSSFVTSPAADNIEMLPHYEPIPFSSSMNESAPTGITDHIVQVKVNKYGDTWDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH