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Report for CCDS46161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46161.1 Public Homo sapiens 19 ZNF841 24 110 108 CCDS HistoryNCBI Gene:284371Re-query CCDS DB by CCDS ID:46161.1Re-query CCDS DB by GeneID:284371See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389534.8 ENSP00000374185.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389534.8Link to Ensembl Protein Viewer:ENSP00000374185.4Re-query CCDS DB by Nucleotide ID:ENST00000389534Re-query CCDS DB by Protein ID:ENSP00000374185
Original member Current member EBI ENST00000594440.6 ENSP00000470100.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000594440.6Link to Ensembl Protein Viewer:ENSP00000470100.2Re-query CCDS DB by Nucleotide ID:ENST00000594440Re-query CCDS DB by Protein ID:ENSP00000470100
Original member Current member EBI ENST00000594295.5 ENSP00000470746.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594295.5Link to Ensembl Protein Viewer:ENSP00000470746.1Re-query CCDS DB by Nucleotide ID:ENST00000594295Re-query CCDS DB by Protein ID:ENSP00000470746
Original member Current member NCBI NM_001136499.2 NP_001129971.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136499.2Link to Protein Sequence:NP_001129971.1Re-query CCDS DB by Nucleotide ID:NM_001136499Re-query CCDS DB by Protein ID:NP_001129971Link to BLAST:NP_001129971.1
Original member Current member NCBI NM_001352298.2 NP_001339227.1 Accepted alive Link to Nucleotide Sequence:NM_001352298.2Link to Protein Sequence:NP_001339227.1Re-query CCDS DB by Nucleotide ID:NM_001352298Re-query CCDS DB by Protein ID:NP_001339227Link to BLAST:NP_001339227.1
Original member Current member NCBI NM_001369826.1 NP_001356755.1 Accepted alive Link to Nucleotide Sequence:NM_001369826.1Link to Protein Sequence:NP_001356755.1Re-query CCDS DB by Nucleotide ID:NM_001369826Re-query CCDS DB by Protein ID:NP_001356755Link to BLAST:NP_001356755.1
Original member Current member NCBI NM_001369827.1 NP_001356756.1 Accepted alive Link to Nucleotide Sequence:NM_001369827.1Link to Protein Sequence:NP_001356756.1Re-query CCDS DB by Nucleotide ID:NM_001369827Re-query CCDS DB by Protein ID:NP_001356756Link to BLAST:NP_001356756.1
Original member Current member NCBI NM_001369828.1 NP_001356757.1 Accepted alive Link to Nucleotide Sequence:NM_001369828.1Link to Protein Sequence:NP_001356757.1Re-query CCDS DB by Nucleotide ID:NM_001369828Re-query CCDS DB by Protein ID:NP_001356757Link to BLAST:NP_001356757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129971.1 924 Q6ZN19-3 924 100% 0 0
NP_001339227.1 924 Q6ZN19-3 924 100% 0 0
NP_001356755.1 924 Q6ZN19-3 924 100% 0 0
NP_001356756.1 924 Q6ZN19-3 924 100% 0 0
NP_001356757.1 924 Q6ZN19-3 924 100% 0 0

Chromosomal Locations for CCDS 46161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52065107 52067610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52076044 52076172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52076958 52077084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52084787 52084801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2775 nt):
ATGGCTCTTCCTCAGGGATCTTTGACATTCAGGGATGTGGCTGTAGAATTCTCTCAGGAGGAGTGGAAAT
GCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCT
GGGACTCTGTCTTCCTGACCTGAATATTATCTCCATGTTGGAGCAAGGGAAAGAGCCCTGGACTGTGGTG
AGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCGGTATCTCTC
CTAAATGTGTGATCAAGGAATTACCACCAATACAGAACAGTAACACAGGAGAAAAATTCCAAGCAGTGAT
GTTGGAAGGACATGAAAGCTATGACACTGAAAATTTTTACTTCAGGGAAATCCGGAAAAATCTACAGGAA
GTTGACTTTCAATGGAAAGATGGTGAAATAAATTATAAAGAAGGGCCGATGACCCATAAAAACAATCTTA
CTGGTCAAAGAGTTCGACATAGTCAAGGGGACGTAGAAAACAAGCATATGGAAAATCAGCTTATATTAAG
GTTTCAGTCCGGTCTGGGTGAATTGCAGAAATTTCAAACTGCAGAGAAAATTTATGGATGTAATCAAATT
GAGAGGACAGTTAATAATTGTTTTTTAGCTTCACCACTTCAAAGAATTTTTCCTGGTGTCCAAACCAACA
TTTCTAGGAAATATGGGAATGATTTTTTGCAACTTTCGTTACCTACACAAGACGAGAAAACACATATTAG
GGAAAAACCTTACATAGGTAATGAGTGTGGCAAAGCCTTCAGAGTGTCTTCAAGTCTTATTAATCATCAG
ATGATACATACTACAGAGAAACCTTACAGATGCAATGAGTCTGGTAAAGCCTTTCATCGGGGCTCACTAC
TAACAGTACATCAGATAGTCCATACAAGAGGGAAACCATACCAATGTGATGTATGTGGCAGGATCTTCAG
ACAAAATTCAGATCTTGTAAATCACCGGAGAAGTCACACTGGAGACAAACCCTACATATGTAATGAATGT
GGCAAGTCCTTTAGTAAAAGTTCCCACCTTGCAGTTCATCAGAGAATTCATACTGGAGAGAAACCTTACA
AATGTAATCGATGTGGGAAGTGCTTTAGTCAAAGTTCCTCTCTTGCAACTCATCAGACAGTTCATACTGG
AGACAAACCCTACAAATGTAATGAATGTGGCAAAACCTTTAAACGGAACTCAAGCCTCACTGCACATCAT
ATAATCCATGCAGGAAAGAAACCATATACATGTGATGTATGTGGCAAGGTCTTTTATCAGAATTCACAAC
TTGTAAGGCACCAGATAATTCATACTGGAGAGACACCTTACAAATGTAATGAATGTGGCAAGGTCTTCTT
TCAACGTTCACGTCTTGCAGGGCACCGGAGAATTCATACTGGAGAGAAACCCTACAAATGTAATGAATGT
GGCAAGGTCTTCAGTCAACATTCACATCTTGCAGTGCATCAGAGAGTTCATACTGGAGAGAAACCTTACA
AATGTAATGAATGTGGCAAAGCCTTTAATTGGGGCTCATTACTAACTGTACATCAGAGAATTCATACCGG
AGAGAAACCTTACAAATGTAATGTGTGTGGCAAGGTCTTTAATTACGGTGGATACCTTTCGGTTCATATG
AGATGTCATACTGGAGAGAAACCTCTCCATTGTAATAAATGTGGCATGGTCTTCACTTACTATTCATGCC
TAGCACGTCATCAAAGAATGCATACCGGAGAGAAACCTTACAAATGTAATGTGTGTGGCAAGGTCTTCAT
TGACAGTGGAAACCTTTCAATTCATAGGCGAAGTCATACCGGAGAGAAACCTTTCCAGTGTAACGAATGC
GGCAAGGTCTTCAGTTACTACTCATGCCTAGCACGTCATCGGAAAATTCATACCGGAGAGAAACCTTATA
AATGTAATGATTGTGGCAAAGCCTATACTCAGCGTTCAAGCCTCACTAAACATCTGGTAATTCATACTGG
AGAGAACCCTTACCACTGTAATGAATTTGGTGAGGCTTTTATCCAAAGTTCAAAACTTGCAAGATATCAC
AGAAATCCTACTGGGGAGAAACCACACAAATGTAGTGAATGTGGTAGAACTTTTAGTCATAAAACAAGTC
TGGTGTACCATCAGAGAAGACATACTGGAGAGATGCCATACAAATGTATTGAATGTGGGAAAGTCTTTAA
CTCCACTACAACCCTGGCAAGGCATCGGAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAATGT
GGCAAGGTCTTCCGTTATCGCTCAGGCCTCGCACGTCATTGGAGTATTCATACTGGAGAGAAACCTTACA
AATGTAATGAGTGTGGCAAAGCCTTTAGAGTACGTTCAATTCTGCTTAATCATCAGATGATGCATACTGG
AGAGAAACCTTATAAATGTAATGAATGTGGTAAAGCTTTTATCGAAAGGTCAAACTTGGTTTACCATCAG
AGAAACCATACTGGAGAGAAGCCATACAAATGTATGGAATGTGGCAAGGCGTTTGGGCGGCGGTCTTGCC
TCACTAAACACCAACGAATTCATTCTAGTGAAAAACCTTATAAATGTAATGAGTGTGGCAAATCTTACAT
TAGTCGCTCAGGCCTCACTAAACATCAGATAAAACATGCTGGAGAGAACCTTACAACTAAACTCAATGTG
GAAAGGCCGTTAGATGTTGTCCTAACCTCTGGGATCCCCAAATAA

Translation (924 aa):
MALPQGSLTFRDVAVEFSQEEWKCLDPVQKALYRDVMLENYRNLGFLGLCLPDLNIISMLEQGKEPWTVV
SQVKIARNPNCGECMKGVITGISPKCVIKELPPIQNSNTGEKFQAVMLEGHESYDTENFYFREIRKNLQE
VDFQWKDGEINYKEGPMTHKNNLTGQRVRHSQGDVENKHMENQLILRFQSGLGELQKFQTAEKIYGCNQI
ERTVNNCFLASPLQRIFPGVQTNISRKYGNDFLQLSLPTQDEKTHIREKPYIGNECGKAFRVSSSLINHQ
MIHTTEKPYRCNESGKAFHRGSLLTVHQIVHTRGKPYQCDVCGRIFRQNSDLVNHRRSHTGDKPYICNEC
GKSFSKSSHLAVHQRIHTGEKPYKCNRCGKCFSQSSSLATHQTVHTGDKPYKCNECGKTFKRNSSLTAHH
IIHAGKKPYTCDVCGKVFYQNSQLVRHQIIHTGETPYKCNECGKVFFQRSRLAGHRRIHTGEKPYKCNEC
GKVFSQHSHLAVHQRVHTGEKPYKCNECGKAFNWGSLLTVHQRIHTGEKPYKCNVCGKVFNYGGYLSVHM
RCHTGEKPLHCNKCGMVFTYYSCLARHQRMHTGEKPYKCNVCGKVFIDSGNLSIHRRSHTGEKPFQCNEC
GKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLVIHTGENPYHCNEFGEAFIQSSKLARYH
RNPTGEKPHKCSECGRTFSHKTSLVYHQRRHTGEMPYKCIECGKVFNSTTTLARHRRIHTGEKPYKCNEC
GKVFRYRSGLARHWSIHTGEKPYKCNECGKAFRVRSILLNHQMMHTGEKPYKCNECGKAFIERSNLVYHQ
RNHTGEKPYKCMECGKAFGRRSCLTKHQRIHSSEKPYKCNECGKSYISRSGLTKHQIKHAGENLTTKLNV
ERPLDVVLTSGIPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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