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Report for CCDS86930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86930.1 Public Homo sapiens 2 SEPTIN2 24 110 108 CCDS HistoryNCBI Gene:4735Re-query CCDS DB by CCDS ID:86930.1Re-query CCDS DB by GeneID:4735See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407971.5 ENSP00000384525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407971.5Link to Ensembl Protein Viewer:ENSP00000384525.1Re-query CCDS DB by Nucleotide ID:ENST00000407971Re-query CCDS DB by Protein ID:ENSP00000384525
Original member Current member NCBI NM_001349304.2 NP_001336233.1 Accepted alive Link to Nucleotide Sequence:NM_001349304.2Link to Protein Sequence:NP_001336233.1Re-query CCDS DB by Nucleotide ID:NM_001349304Re-query CCDS DB by Protein ID:NP_001336233Link to BLAST:NP_001336233.1
Original member Current member NCBI NM_001349305.2 NP_001336234.1 Accepted alive Link to Nucleotide Sequence:NM_001349305.2Link to Protein Sequence:NP_001336234.1Re-query CCDS DB by Nucleotide ID:NM_001349305Re-query CCDS DB by Protein ID:NP_001336234Link to BLAST:NP_001336234.1
Original member Current member NCBI NM_001349306.2 NP_001336235.1 Accepted alive Link to Nucleotide Sequence:NM_001349306.2Link to Protein Sequence:NP_001336235.1Re-query CCDS DB by Nucleotide ID:NM_001349306Re-query CCDS DB by Protein ID:NP_001336235Link to BLAST:NP_001336235.1

Chromosomal Locations for CCDS 86930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241326104 241326113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335126 241335212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335975 241336098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337382 241337516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337673 241337790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241342992 241343093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241343752 241343897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241346166 241346249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241348134 241348191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241350073 241350174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGTGGTCGGTGAATCAGGTCTAGGAAAATCGACTCTCATAAACAGCCTATTCCTAACTGATCTGTACC
CA
GAAAGAGTCATACCTGGAGCAGCAGAAAAAATTGAAAGAACTGTCCAGATTGAGGCTTCAACTGTTGA
A
ATTGAAGAGCGAGGGGTCAAGCTACGCCTGACAGTGGTAGATACCCCTGGCTATGGTGACGCTATCAAC
TGC
AGAGATTGTTTTAAGACAATTATCTCCTATATTGATGAGCAATTTGAGAGGTACCTGCATGACGAGA
GC
GGCTTGAACAGGCGGCACATCATTGATAATAGGGTGCATTGTTGCTTTTACTTTATTTCACCTTTTGG
A
CATGGACTTAAGCCCTTAGATGTGGCGTTTATGAAGGCAATACACAACAAGGTGAATATTGTGCCTGTC
ATT
GCAAAAGCTGACACTCTCACCCTGAAGGAACGGGAGCGGCTGAAGAAAAGGATTCTGGATGAAATTG
AA
GAACATAACATCAAAATCTATCACTTACCTGATGCAGAATCAGATGAAGATGAAGATTTTAAAGAGCA
G
ACTAGACTTCTCAAGGCTAGCATCCCATTCTCTGTGGTTGGATCCAATCAGTTGATTGAAGCCAAAGGA
AAG
AAGGTCAGAGGCCGCCTCTACCCCTGGGGTGTTGTGGAAGTGGAGAACCCAGAGCACAATGACTTTC
TG
AAGCTGAGAACCATGCTCATCACCCACATGCAGGATCTCCAGGAGGTGACCCAGGACCTTCATTATGA
A
AACTTCCGTTCTGAGAGACTCAAGAGAGGCGGCAGGAAAGTGGAGAATGAGGACATGAATAAAGACCAG
ATC
TTGCTGGAAAAAGAAGCTGAGCTCCGCCGCATGCAAGAGATGATTGCAAGGATGCAGGCGCAGATGC
AG
ATGCAGATGCAGGGCGGGGATGGCGATGGCGGGGCTCTCGGGCACCACGTGTAA


Translation (321 aa):
MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN
C
RD
CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPV
I
AKADTLTLKERERLKKR
ILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKG
K
KVRGRLYPWGVVEVENPEHNDFLKLRTML
ITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQ
I
LLEKEAE
LRRMQEMIARMQAQMQMQMQGGDGDGGALGHHV



Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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