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Report for CCDS73187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73187.1 Public Homo sapiens 10 PSD 24 110 108 CCDS HistoryNCBI Gene:5662Re-query CCDS DB by CCDS ID:73187.1Re-query CCDS DB by GeneID:5662See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611678.4 ENSP00000481250.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611678.4Link to Ensembl Protein Viewer:ENSP00000481250.1Re-query CCDS DB by Nucleotide ID:ENST00000611678Re-query CCDS DB by Protein ID:ENSP00000481250
Original member Current member NCBI NM_001270966.2 NP_001257895.1 Accepted alive Link to Nucleotide Sequence:NM_001270966.2Link to Protein Sequence:NP_001257895.1Re-query CCDS DB by Nucleotide ID:NM_001270966Re-query CCDS DB by Protein ID:NP_001257895Link to BLAST:NP_001257895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257895.1 645 A5PKW4-2 645 100% 0 0

Chromosomal Locations for CCDS 73187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102403200 102403430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102403842 102403985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102404583 102404727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102404898 102405055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102405183 102405253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102405346 102405536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102407223 102407266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102410858 102410947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102411058 102411116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102411707 102411819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102412147 102412227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102412381 102412575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102413769 102414184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCCTCTCAAGTCACCTGTGCCCTTTCTACCTGGGACGAGCCCCTCGGCTGATGGGCCTGACTCTTTCA
GTTGTGTGTTCGAAGCCATCCTGGAGTCACACCGGGCCAAAGGCACCTCCTATACCAGCCTCGCCTCGCT
GGAGGCCTTGGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCACCTTTGAGCTGCCTCCCCAACCCCCT
GCACCCCGGCCCGACCCACCAGCTCCCGCCCCACTTGCCCCTCTTGAACCGGATTCTGGTACCAGCTCTG
CTGCTGATGGTCCTTGGACACAGAGAGGGGAGGAGGAGGAGGCAGAGGCCAGAGCCAAGCTGGCCCCAGG
GAGGGAGCCCCCTAGTCCCTGCCACTCAGAGGACAGCCTTGGGCTGGGGGCAGCACCCCTTGGCAGCGAA
CCACCCCTGAGCCAGCTGGTGTCCGACTCAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCCTGGGAA
GCACAGACACCTTGTCCAATGGGCAGAAAGCGGACCTGGAGGCTGCGCAGCGCCTGGCCAAGAGGCTGTA
CCGACTAGATGGCTTCAGGAAGGCCGATGTGGCCCGGCACCTGGGCAAGAACAATGACTTCAGCAAACTG
GTGGCTGGGGAGTACCTCAAGTTCTTTGTCTTCACGGGCATGACTCTGGACCAAGCTCTCAGGGTGTTTC
TGAAGGAGCTGGCCTTAATGGGTGAGACCCAGGAACGAGAGCGCGTGCTGGCCCACTTCTCCCAGCGATA
CTTCCAGTGCAATCCTGAAGCCCTGTCCTCAGAGGACGGCGCCCACACGCTGACCTGTGCGCTCATGCTG
CTCAACACGGATCTCCACGGCCATAACATCGGGAAGCGCATGACCTGCGGGGACTTCATCGGGAACCTGG
AGGGCCTCAATGATGGCGGCGACTTCCCTAGGGAGCTGCTCAAGGCCTTGTACAGCTCCATCAAGAATGA
GAAGCTGCAGTGGGCCATAGACGAGGAGGAGCTGAGACGCTCTCTGTCTGAGTTGGCCGACCCCAACCCC
AAGGTCATCAAGCGGATCAGCGGGGGCAGTGGCAGTGGCTCCAGCCCTTTCCTGGACCTGACTCCCGAGC
CTGGGGCTGCCGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGGAAGAC
ACCTCGGGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCTACCTGCAGAAG
GAGGAGTACAAGCCTGGGAAGGCCCTTTCAGAGACGGAGCTCAAGAATGCCATCAGCATCCACCATGCCC
TGGCCACTCGTGCCAGTGACTACAGCAAGAGGCCCCACGTCTTCTACCTGCGCACAGCTGACTGGCGGGT
CTTCCTCTTCCAGGCCCCGAGCCTGGAGCAGATGCAGTCCTGGATCACTCGCATCAATGTAGTAGCCGCT
ATGTTCTCTGCGCCCCCCTTCCCAGCTGCTGTTAGCTCCCAAAAGAAGTTCAGCCGCCCTCTCCTGCCCA
GCGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGCGGACCCACGAGGCCAAGCTGAAGGCCATGGCAAG
TGAGCTGCGGGAGCACCGGGCCGCCCAGCTGGGCAAGAAGGGCCGGGGCAAGGAGGCTGAAGAGCAGCGG
CAGAAGGAGGCCTACCTGGAGTTTGAGAAATCCCGCTACAGCACCTATGCAGCGCTGCTTCGGGTCAAGC
TGAAGGCAGGCAGTGAGGAGCTGGATGCAGTGGAGGCAGCACTGGCCCAGGCCGGGAGCACAGAGGATGG
ACTCCCTCCTTCTCACTCCAGTCCCTCCCTGCAGCCCAAACCCTCCAGCCAGCCCCGGGCTCAGCGTCAC
AGCTCAGAGCCTCGGCCAGGGGCAGGCAGTGGGCGGCGGAAGCCCTGA

Translation (645 aa):
MPLKSPVPFLPGTSPSADGPDSFSCVFEAILESHRAKGTSYTSLASLEALASPGPTQSPFFTFELPPQPP
APRPDPPAPAPLAPLEPDSGTSSAADGPWTQRGEEEEAEARAKLAPGREPPSPCHSEDSLGLGAAPLGSE
PPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVARHLGKNNDFSKL
VAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALSSEDGAHTLTCALML
LNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKNEKLQWAIDEEELRRSLSELADPNP
KVIKRISGGSGSGSSPFLDLTPEPGAAVYKHGALVRKVHADPDCRKTPRGKRGWKSFHGILKGMILYLQK
EEYKPGKALSETELKNAISIHHALATRASDYSKRPHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAA
MFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEAKLKAMASELREHRAAQLGKKGRGKEAEEQR
QKEAYLEFEKSRYSTYAALLRVKLKAGSEELDAVEAALAQAGSTEDGLPPSHSSPSLQPKPSSQPRAQRH
SSEPRPGAGSGRRKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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