NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13766.1 Public Homo sapiens 22 TBX1 24 110 108 CCDS HistoryNCBI Gene:6899Re-query CCDS DB by CCDS ID:13766.1Re-query CCDS DB by GeneID:6899See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329705.11 ENSP00000331176.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329705.11Link to Ensembl Protein Viewer:ENSP00000331176.7Re-query CCDS DB by Nucleotide ID:ENST00000329705Re-query CCDS DB by Protein ID:ENSP00000331176
Original member Current member NCBI NM_080646.2 NP_542377.1 Accepted alive Link to Nucleotide Sequence:NM_080646.2Link to Protein Sequence:NP_542377.1Re-query CCDS DB by Nucleotide ID:NM_080646Re-query CCDS DB by Protein ID:NP_542377Link to BLAST:NP_542377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542377.1 398 O43435-1 398 100% 0 0

Chromosomal Locations for CCDS 13766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 19759644 19759677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19760905 19761280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19763241 19763342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19764155 19764326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19764958 19765113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19765758 19765825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19765902 19766002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19779220 19779407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGCACTTCAGCACCGTCACCAGGGACATGGAAGCCTTCACGGCCAGCAGCCTGAGCAGCCTGGGGGCCG
CGGGGGGCTTCCCGGGCGCCGCGTCGCCCGGCGCCGACCCGTACGGCCCGCGCGAGCCCCCGCCGCCGCC
GCCGCGCTACGACCCGTGCGCCGCCGCCGCCCCCGGCGCCCCGGGCCCGCCGCCGCCGCCGCACGCCTAC
CCGTTTGCGCCGGCCGCCGGGGCCGCCACCAGCGCCGCCGCCGAGCCCGAGGGCCCCGGGGCCAGCTGCG
CGGCCGCAGCCAAGGCGCCGGTGAAGAAGAACGCGAAGGTGGCCGGTGTGAGCGTGCAGCTAGAGATGAA
GGCGCTGTGGGACGAGTTCAACCAGCTGGGCACCGAGATGATCGTCACCAAGGCCGGCAGGCGGATGTTT
CCCACCTTCCAAGTGAAGCTCTTCGGCATGGATCCCATGGCCGACTATATGCTGCTCATGGACTTCGTGC
CGGTGGACGATAAGCGCTACCGGTACGCCTTCCACAGCTCCTCCTGGCTGGTGGCGGGGAAGGCCGACCC
TGCCACGCCAGGCCGCGTGCACTACCACCCGGACTCGCCTGCCAAGGGCGCGCAGTGGATGAAGCAAATC
GTGTCCTTCGACAAGCTCAAGCTGACCAACAACCTACTGGACGACAACGGCCACATTATTCTGAATTCCA
TGCACAGATACCAGCCCCGCTTCCACGTGGTCTATGTGGACCCACGCAAAGATAGCGAGAAATATGCCGA
GGAGAACTTCAAAACCTTTGTGTTCGAGGAGACACGATTCACCGCGGTCACTGCCTACCAGAACCATCGG
ATCACGCAGCTCAAGATTGCCAGCAATCCCTTCGCGAAAGGCTTCCGGGACTGTGACCCTGAGGACTGGC
CCCGGAACCACCGGCCCGGCGCACTGCCGCTCATGAGCGCCTTCGCGCGCTCGCGGAACCCCGTGGCTTC
CCCGACGCAGCCCAGCGGCACGGAGAAAGGTGGACATGTCCTGAAGGACAAGGAAGTGAAAGCTGAGACG
TCTAGGAACACACCAGAGAGAGAAGTGGAGCTTCTGAGGGATGCAGGTGGCTGTGTGAACCTGGGGCTCC
CCTGCCCCGCAGAGTGCCAACCCTTCAATACCCAGGGCCTGGTGGCTGGGAGGACCGCAGGTGACCGTCT
TTGTTGA

Translation (398 aa):
MHFSTVTRDMEAFTASSLSSLGAAGGFPGAASPGADPYGPREPPPPPPRYDPCAAAAPGAPGPPPPPHAY
PFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAKVAGVSVQLEMKALWDEFNQLGTEMIVTKAGRRMF
PTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQI
VSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHR
ITQLKIASNPFAKGFRDCDPEDWPRNHRPGALPLMSAFARSRNPVASPTQPSGTEKGGHVLKDKEVKAET
SRNTPEREVELLRDAGGCVNLGLPCPAECQPFNTQGLVAGRTAGDRLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH