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Report for CCDS62864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62864.1 Public Homo sapiens 2 LDAH 24 110 108 CCDS HistoryNCBI Gene:60526Re-query CCDS DB by CCDS ID:62864.1Re-query CCDS DB by GeneID:60526See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62864.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541941.5 ENSP00000440570.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541941.5Link to Ensembl Protein Viewer:ENSP00000440570.1Re-query CCDS DB by Nucleotide ID:ENST00000541941Re-query CCDS DB by Protein ID:ENSP00000440570
Original member Current member EBI ENST00000619656.4 ENSP00000483067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619656.4Link to Ensembl Protein Viewer:ENSP00000483067.1Re-query CCDS DB by Nucleotide ID:ENST00000619656Re-query CCDS DB by Protein ID:ENSP00000483067
Original member Current member NCBI NM_001282721.2 NP_001269650.1 Accepted alive Link to Nucleotide Sequence:NM_001282721.2Link to Protein Sequence:NP_001269650.1Re-query CCDS DB by Nucleotide ID:NM_001282721Re-query CCDS DB by Protein ID:NP_001269650Link to BLAST:NP_001269650.1
Original member Current member NCBI NM_001282722.2 NP_001269651.1 Accepted alive Link to Nucleotide Sequence:NM_001282722.2Link to Protein Sequence:NP_001269651.1Re-query CCDS DB by Nucleotide ID:NM_001282722Re-query CCDS DB by Protein ID:NP_001269651Link to BLAST:NP_001269651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269650.1 195 Q9H6V9-4 195 100% 0 0
NP_001269651.1 195 Q9H6V9-4 195 100% 0 0

Chromosomal Locations for CCDS 62864.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20686903 20687094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20701570 20701652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20739971 20740205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20774810 20774887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGAAACTTGTGCTCATTGGCCATTCAATAGGCAGCTATTTCACACTTCAGATGCTGAAGCGAGTCCCTG
AGCTCCCGGTAATTCGTGCCTTTCTGCTCTTTCCAACAATTGAACGAATGTCTGAGTCACCCAATGGCAG
AATTGCCACTCCACTTTTGTGCTGGTTTCGATATGTTCTCTATGTTACTGGCTACTTATTATTGAAACCG
TGTCCTGAGACAATCAAGTCCTTGCTAATCAGAAGGGGCCTTCAAGTAATGAACCTAGAGAATGAATTTT
CACCATTGAATATATTAGAACCATTCTGCCTTGCTAATGCTGCCTACCTTGGGGGCCAAGAAATGATGGA
GGTGGTGAAGAGAGATGACGAAACCATAAAGGAGCATTTATGTAAGCTTACATTTTATTATGGTACTATA
GATCCTTGGTGTCCAAAAGAGTACTATGAAGACATTAAGAAGGATTTTCCAGAAGGAGACATTCGACTCT
GTGAGAAAAACATACCTCATGCTTTCATCACCCATTTTAACCAGGAAATGGCAGACATGATTGCTGACTC
CCTAAAGGATGACTTGTCCAAAATGTAA

Translation (195 aa):
MKLVLIGHSIGSYFTLQMLKRVPELPVIRAFLLFPTIERMSESPNGRIATPLLCWFRYVLYVTGYLLLKP
CPETIKSLLIRRGLQVMNLENEFSPLNILEPFCLANAAYLGGQEMMEVVKRDDETIKEHLCKLTFYYGTI
DPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDLSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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