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Report for CCDS7386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7386.1 Public Homo sapiens 10 ATAD1 24 110 108 CCDS HistoryNCBI Gene:84896Re-query CCDS DB by CCDS ID:7386.1Re-query CCDS DB by GeneID:84896See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7386.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328142.3 ENSP00000339016.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328142.3Link to Ensembl Protein Viewer:ENSP00000339016.2Re-query CCDS DB by Nucleotide ID:ENST00000328142Re-query CCDS DB by Protein ID:ENSP00000339016
Original member Current member EBI ENST00000308448.11 ENSP00000339017.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308448.11Link to Ensembl Protein Viewer:ENSP00000339017.4Re-query CCDS DB by Nucleotide ID:ENST00000308448Re-query CCDS DB by Protein ID:ENSP00000339017
Original member Current member EBI ENST00000680024.1 ENSP00000506333.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000680024.1Link to Ensembl Protein Viewer:ENSP00000506333.1Re-query CCDS DB by Nucleotide ID:ENST00000680024Re-query CCDS DB by Protein ID:ENSP00000506333
Original member Current member NCBI NM_001321967.2 NP_001308896.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321967.2Link to Protein Sequence:NP_001308896.1Re-query CCDS DB by Nucleotide ID:NM_001321967Re-query CCDS DB by Protein ID:NP_001308896Link to BLAST:NP_001308896.1
Original member Current member NCBI NM_032810.4 NP_116199.2 Accepted alive Link to Nucleotide Sequence:NM_032810.4Link to Protein Sequence:NP_116199.2Re-query CCDS DB by Nucleotide ID:NM_032810Re-query CCDS DB by Protein ID:NP_116199Link to BLAST:NP_116199.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308896.1 361 Q8NBU5-1 361 100% 0 0
NP_116199.2 361 Q8NBU5-1 361 100% 0 0

Chromosomal Locations for CCDS 7386.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 87754687 87754807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87756789 87756922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87767673 87767723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87770952 87771041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87776321 87776427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87784470 87784670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87790310 87790430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87792657 87792755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87814438 87814599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGA
CAATATTTGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCA
AAAAGTAGAAGCTCAGAAACAGGCAGAAAAACTAATGAAGCAAATTGGAGTGAAAAATGTGAAGCTCTCA
GAATATGAAATGAGTATTGCTGCTCATCTTGTAGACCCTCTTAATATGCATGTTACTTGGAGTGATATAG
CAGGTTTAGATGATGTCATTACGGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAACATTTGTT
TGAGAATTCCAGGCTTCTGCAGCCTCCAAAAGGTGTTCTTCTCTATGGGCCTCCAGGCTGTGGTAAAACG
TTGATTGCCAAGGCCACAGCCAAAGAAGCAGGCTGTCGATTTATTAACCTTCAGCCTTCGACACTGACCG
ATAAGTGGTATGGAGAATCTCAGAAATTGGCTGCTGCTGTCTTCTCCCTTGCCATAAAGCTACAACCATC
CATCATCTTTATAGATGAAATAGACTCCTTTCTACGAAACCGTTCAAGTTCTGACCATGAAGCTACAGCC
ATGATGAAAGCTCAGTTTATGAGTCTCTGGGATGGATTGGATACTGATCACAGCTGCCAGGTCATAGTAA
TGGGAGCTACCAATCGTCCTCAGGACCTTGACTCGGCTATAATGAGAAGAATGCCTACAAGATTTCATAT
CAACCAGCCTGCTTTAAAACAGAGAGAAGCAATCCTGAAACTCATCTTGAAAAATGAAAATGTGGATAGG
CATGTAGACCTGCTAGAAGTTGCCCAGGAAACTGATGGGTTTTCAGGAAGTGACCTAAAAGAGATGTGTC
GAGATGCTGCCCTCCTCTGTGTTAGAGAATATGTTAATTCTACATCAGAAGAAAGCCATGACGAAGATGA
AATTCGGCCTGTTCAACAGCAGGACCTGCATCGGGCAATTGAAAAGATGAAGAAATCAAAGGATGCAGCA
TTTCAGAATGTTTTAACACATGTTTGTTTAGATTAA

Translation (361 aa):
MVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVKNVKLS
EYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKT
LIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATA
MMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDR
HVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAA
FQNVLTHVCLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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