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Report for CCDS77876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77876.1 Public Homo sapiens 3 SENP5 24 110 108 CCDS HistoryNCBI Gene:205564Re-query CCDS DB by CCDS ID:77876.1Re-query CCDS DB by GeneID:205564See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445299.6 ENSP00000390231.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445299.6Link to Ensembl Protein Viewer:ENSP00000390231.2Re-query CCDS DB by Nucleotide ID:ENST00000445299Re-query CCDS DB by Protein ID:ENSP00000390231
Original member Current member NCBI NM_001308045.2 NP_001294974.1 Accepted alive Link to Nucleotide Sequence:NM_001308045.2Link to Protein Sequence:NP_001294974.1Re-query CCDS DB by Nucleotide ID:NM_001308045Re-query CCDS DB by Protein ID:NP_001294974Link to BLAST:NP_001294974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294974.1 709 Q96HI0-2 709 100% 0 0

Chromosomal Locations for CCDS 77876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196885182 196886694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196899666 196899771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196899924 196900062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196900365 196900412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196903533 196903610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196927796 196927879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196929633 196929683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196930813 196930923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGAAAAAACAGAGGAAAATTCTATGGAGGAAAGGAATCCACTTAGCCTTTTCTGAGAAATGGAATACTG
GGTTTGGAGGCTTTAAGAAGTTTTATTTTCACCAACACTTGTGCATTCTGAAAGCTAAGCTGGGAAGGCC
AGTTACTTGGAATAGACAGTTGAGACATTTCCAGGGTAGAAAGAAAGCTCTTCAAATCCAGAAAACGTGG
ATCAAGGATGAACCCCTTTGTGCTAAGACCAAGTTCAATGTGGCTACTCAAAATGTTAGTACTTTGTCCT
CTAAAGTGAAAAGAAAGGACGCTAAACACTTCATTTCCTCCTCAAAGACTCTCCTGAGACTCCAAGCAGA
GAAGCTGTTGTCATCAGCAAAGAATTCTGACCATGAATACTGCAGAGAGAAAAATCTCTTGAAGGCAGTT
ACTGACTTTCCATCAAATAGTGCTTTAGGTCAGGCCAATGGTCACAGACCTAGGACAGACCCACAACCTT
CTGACTTTCCCATGAAGTTCAATGGGGAGAGCCAAAGTCCAGGTGAGAGTGGCACGATTGTGGTCACCTT
GAACAACCATAAGAGAAAGGGCTTTTGTTACGGCTGCTGCCAAGGGCCGGAGCACCACAGGAATGGGGGA
CCCTTGATTCCAAAAAAGTTCCAACTTAACCAACATAGAAGGATAAAATTATCTCCTCTTATGATGTATG
AGAAATTATCCATGATTAGATTTCGGTACAGGATTCTCAGATCCCAGCACTTCAGAACCAAAAGCAAGGT
TTGCAAGCTAAGAAAAGCCCAGCGAAGCTGGGTACAGAAAGTCACTGGGGACCATCAAGAGACCCGTAGG
GAGAACGGTGAGGGTGGCAGTTGCAGCCCATTTCCTTCCCCAGAACCTAAAGACCCTTCTTGTCGGCATC
AGCCGTACTTTCCAGATATGGACAGCAGTGCTGTGGTGAAGGGGACGAACTCTCATGTGCCTGATTGCCA
CACTAAAGGAAGCTCTTTCTTGGGCAAGGAGCTTAGTTTAGACGAAGCATTCCCTGACCAACAGAATGGC
AGTGCCACAAACGCCTGGGACCAGTCATCCTGTTCTTCTCCTAAGTGGGAGTGTACAGAGCTGATTCATG
ACATCCCCTTACCAGAACATCGTTCTAATACCATGTTCATTTCAGAAACTGAAAGAGAAATTATGACTCT
GGGTCAGGAAAATCAGACAAGTTCTGTCAGTGATGACAGAGTAAAACTGTCAGTGTCTGGAGCAGATACA
TCTGTGAGTAGCGTAGATGGGCCTGTGTCCCAAAAGGCTGTTCAAAATGAGAACTCATACCAGATGGAGG
AGGATGGATCTCTCAAGCAGAGCATTCTTAGTTCTGAGTTGCTGGACCACCCTTACTGTAAAAGTCCACT
GGAGGCTCCCTTGGTGTGCAGTGGACTCAAACTAGAAAATCAAGTAGGAGGTGGAAAGAACAGTCAGAAA
GCCTCTCCAGTGGATGATGAACAGCTGTCAGTCTGTCTTTCTGGATTCCTAGATGAGGTTATGAAGAAGT
ATGGCAGTTTGGTTCCACTCAGTGAAAAAGAAGTCCTTGGAAGATTAAAAGATGTCTTTAATGAAGACTT
TTCTAATAGAAAACCATTTATCAATAGGGAAATAACAAACTATCGGGCCAGACATCAAAAATGTAACTTC
CGTATCTTCTATAATAAACACATGCTGGATATGGACGACCTGGCGACTCTGGATGGTCAGAACTGGCTGA
ATGACCAGGTCATTAATATGTATGGTGAGCTGATAATGGATGCAGTCCCAGACAAAGTTCACTTCTTCAA
CAGCTTTTTTCATAGACAGCTGGTAACCAAAGGATATAATGGAGTAAAAAGATGGACTAAAAAGAATATA
AGAAAGTATTTGCTGACTGAAGCCAGAGAAAAAAATAGACCTGAATTTCTTCAGGGTTGGCAGACTGCTG
TTACGAAGTGTATTCCACAACAGAAAAACGACAGTGACTGTGGAGTCTTTGTGCTCCAGTACTGCAAGTG
CCTCGCCTTAGAGCAGCCTTTCCAGTTTTCACAAGAAGACATGCCCCGAGTGCGGAAGAGGATTTACAAG
GAGCTATGTGAGTGCCGGCTCATGGACTGA

Translation (709 aa):
MKKQRKILWRKGIHLAFSEKWNTGFGGFKKFYFHQHLCILKAKLGRPVTWNRQLRHFQGRKKALQIQKTW
IKDEPLCAKTKFNVATQNVSTLSSKVKRKDAKHFISSSKTLLRLQAEKLLSSAKNSDHEYCREKNLLKAV
TDFPSNSALGQANGHRPRTDPQPSDFPMKFNGESQSPGESGTIVVTLNNHKRKGFCYGCCQGPEHHRNGG
PLIPKKFQLNQHRRIKLSPLMMYEKLSMIRFRYRILRSQHFRTKSKVCKLRKAQRSWVQKVTGDHQETRR
ENGEGGSCSPFPSPEPKDPSCRHQPYFPDMDSSAVVKGTNSHVPDCHTKGSSFLGKELSLDEAFPDQQNG
SATNAWDQSSCSSPKWECTELIHDIPLPEHRSNTMFISETEREIMTLGQENQTSSVSDDRVKLSVSGADT
SVSSVDGPVSQKAVQNENSYQMEEDGSLKQSILSSELLDHPYCKSPLEAPLVCSGLKLENQVGGGKNSQK
ASPVDDEQLSVCLSGFLDEVMKKYGSLVPLSEKEVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNF
RIFYNKHMLDMDDLATLDGQNWLNDQVINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKNI
RKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYK
ELCECRLMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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