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Report for CCDS73434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73434.1 Public Homo sapiens 12 CD163L1 24 110 108 CCDS HistoryNCBI Gene:283316Re-query CCDS DB by CCDS ID:73434.1Re-query CCDS DB by GeneID:283316See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416109.2 ENSP00000393474.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416109.2Link to Ensembl Protein Viewer:ENSP00000393474.2Re-query CCDS DB by Nucleotide ID:ENST00000416109Re-query CCDS DB by Protein ID:ENSP00000393474
Original member Current member NCBI NM_001297650.2 NP_001284579.2 Accepted alive Link to Nucleotide Sequence:NM_001297650.2Link to Protein Sequence:NP_001284579.2Re-query CCDS DB by Nucleotide ID:NM_001297650Re-query CCDS DB by Protein ID:NP_001284579Link to BLAST:NP_001284579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284579.2 1463 Q9NR16-4 1463 100% 0 0

Chromosomal Locations for CCDS 73434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7357404 7357486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7367236 7367331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7368087 7368197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7368933 7368965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7369357 7369665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7373320 7373640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7374442 7374756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7374831 7374923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7375281 7375595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7375700 7376014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7378978 7379298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7396095 7396415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7398264 7398584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7403535 7403855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7406532 7406852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7432416 7432736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7433344 7433694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7441154 7441246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7444097 7444127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4392 nt):
ATGATGCTGCCTCAAAACTCGTGGCATATTGATTTTGGAAGATGCTGCTGTCATCAGAACCTTTTCTCTG
CTGTGGTAACTTGCATCCTGCTCCTGAATTCCTGCTTTCTCATCAGCAGTTTTAATGGAACAGATTTGGA
GTTGAGGCTGGTCAATGGAGACGGTCCCTGCTCTGGGACAGTGGAGGTGAAATTCCAGGGACAGTGGGGG
ACTGTGTGTGATGATGGGTGGAACACTACTGCCTCAACTGTCGTGTGCAAACAGCTTGGATGTCCATTTT
CTTTCGCCATGTTTCGTTTTGGACAAGCCGTGACTAGACATGGAAAAATTTGGCTTGATGATGTTTCCTG
TTATGGAAATGAGTCAGCTCTCTGGGAATGTCAACACCGGGAATGGGGAAGCCATAACTGTTATCATGGA
GAAGATGTTGGTGTGAACTGTTATGGTAAGAGTCTAACTAGAGTAGGAAGGCAAGGTGAAGCCAATCTGG
GTTTGAGGCTAGTGGATGGAAACAACTCCTGTTCAGGGAGAGTGGAGGTGAAATTCCAAGAAAGGTGGGG
AACTATATGTGATGATGGGTGGAACTTGAATACTGCTGCCGTGGTGTGCAGGCAACTAGGATGTCCATCT
TCTTTTATTTCTTCTGGAGTTGTTAATAGCCCTGCTGTATTGCGCCCCATTTGGCTGGATGACATTTTAT
GCCAGGGGAATGAGTTGGCACTCTGGAATTGCAGACATCGTGGATGGGGAAATCATGACTGCAGTCACAA
TGAGGATGTCACATTAACTTGTTATGATAGTAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGC
TGTATGGGGAGAGTAGAGCTGAAAATCCAAGGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATG
CTGCAGCTGATGTCGTATGCAAGCAGTTGGGATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTT
GCAGTCAGGGTCTGATGTTGTATGGCTTGATGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGAC
TGCAGACATTCCGGAACCGTCAATTTTGACTGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAGATG
GAGCAGATTTGGAACTGCGACTAGCAGATGGAAGTAACAATTGTTCAGGGAGAGTAGAGGTGAGAATTCA
TGAACAGTGGTGGACAATATGTGACCAGAACTGGAAGAATGAACAAGCCCTTGTGGTTTGTAAGCAGCTA
GGATGTCCGTTCAGCGTCTTTGGCAGTCGTCGTGCTAAACCTAGTAATGAAGCTAGAGACATTTGGATAA
ACAGCATATCTTGCACTGGGAATGAGTCAGCTCTCTGGGACTGCACATATGATGGAAAAGCAAAGCGAAC
ATGCTTCCGAAGATCAGATGCTGGAGTAATTTGTTCTGATAAGGCAGATCTGGACCTAAGGCTTGTCGGG
GCTCATAGCCCCTGTTATGGGAGATTGGAGGTGAAATACCAAGGAGAGTGGGGGACTGTGTGTCATGACA
GATGGAGCACAAGGAATGCAGCTGTTGTTTGTAAACAATTGGGATGTGGAAAGCCTTTGCATGTGTTTGG
TATGACCTATTTTAAAGAAGCATCAGGACCTATTTGGCTGGATGACGTTTCTTGCATTGGAAATGAGTCA
AATATCTGGGACTGTGAACACAGTGGATGGGGAAAGCATAATTGTGTACACAGAGAGGATGTGATTGTAA
CCTGCTCAGGTGATGCAACATGGGGCCTGAGGCTGGTGGGCGGCAGCAACCGCTGCTCGGGAAGACTGGA
GGTGTACTTTCAAGGACGGTGGGGCACAGTGTGTGATGACGGCTGGAACAGTAAAGCTGCAGCTGTGGTG
TGTAGCCAGCTGGACTGCCCATCTTCTATCATTGGCATGGGTCTGGGAAACGCTTCTACAGGATATGGAA
AAATTTGGCTCGATGATGTTTCCTGTGATGGAGATGAGTCAGATCTCTGGTCATGCAGGAACAGTGGGTG
GGGAAATAATGACTGCAGTCACAGTGAAGATGTTGGAGTGATCTGTTCTGATGCATCGGATATGGAGCTG
AGGCTTGTGGGTGGAAGCAGCAGGTGTGCTGGAAAAGTTGAGGTGAATGTCCAGGGTGCCGTGGGAATTC
TGTGTGCTAATGGCTGGGGAATGAACATTGCTGAAGTTGTTTGCAGGCAACTTGAATGTGGGTCTGCAAT
CAGGGTCTCCAGAGAGCCTCATTTCACAGAAAGAACATTACACATCTTAATGTCGAATTCTGGCTGCACT
GGAGGGGAAGCCTCTCTCTGGGATTGTATACGATGGGAGTGGAAACAGACTGCGTGTCATTTAAATATGG
AAGCAAGTTTGATCTGCTCAGCCCACAGGCAGCCCAGGCTGGTTGGAGCTGATATGCCCTGCTCTGGACG
TGTTGAAGTGAAACATGCAGACACATGGCGCTCTGTCTGTGATTCTGATTTCTCTCTTCATGCTGCCAAT
GTGCTGTGCAGAGAATTAAACTGTGGAGATGCCATATCTCTTTCTGTGGGAGATCACTTTGGAAAAGGGA
ATGGTCTAACTTGGGCCGAAAAGTTCCAGTGTGAAGGGAGTGAAACTCACCTTGCATTATGCCCCATTGT
TCAACATCCGGAAGACACTTGTATCCACAGCAGAGAAGTTGGAGTTGTCTGTTCCCGATATACAGATGTC
CGACTTGTGAATGGCAAATCCCAGTGTGACGGGCAAGTGGAGATCAACGTGCTTGGACACTGGGGCTCAC
TGTGTGACACCCACTGGGACCCAGAAGATGCCCGTGTTCTATGCAGACAGCTCAGCTGTGGGACTGCTCT
CTCAACCACAGGAGGAAAATATATTGGAGAAAGAAGTGTTCGTGTGTGGGGACACAGGTTTCATTGCTTA
GGGAATGAGTCACTTCTGGATAACTGTCAAATGACAGTTCTTGGAGCACCTCCCTGTATCCATGGAAATA
CTGTCTCTGTGATCTGCACAGGAAGCCTGACCCAGCCACTGTTTCCATGCCTCGCAAATGTATCTGACCC
ATATTTGTCTGCAGTTCCAGAGGGCAGTGCTTTGATCTGCTTAGAGGACAAACGGCTCCGCCTAGTGGAT
GGGGACAGCCGCTGTGCCGGGAGAGTAGAGATCTATCACGACGGCTTCTGGGGCACCATCTGTGATGACG
GCTGGGACCTGAGCGATGCCCACGTGGTGTGTCAAAAGCTGGGCTGTGGAGTGGCCTTCAATGCCACGGT
CTCTGCTCACTTTGGGGAGGGGTCAGGGCCCATCTGGCTGGATGACCTGAACTGCACAGGAATGGAGTCC
CACTTGTGGCAGTGCCCTTCCCGCGGCTGGGGGCAGCACGACTGCAGGCACAAGGAGGACGCAGGGGTCA
TCTGCTCAGAATTCACAGCCTTGAGGCTCTACAGTGAAACTGAAACAGAGAGCTGTGCTGGGAGATTGGA
AGTCTTCTATAACGGGACCTGGGGCAGCGTCGGCAGGAGGAACATCACCACAGCCATAGCAGGCATTGTG
TGCAGGCAGCTGGGCTGTGGGGAGAATGGAGTTGTCAGCCTCGCCCCTTTATCTAAGACAGGCTCTGGTT
TCATGTGGGTGGATGACATTCAGTGTCCTAAAACGCATATCTCCATATGGCAGTGCCTGTCTGCCCCATG
GGAGCGAAGAATCTCCAGCCCAGCAGAAGAGACCTGGATCACATGTGAAGATAGAATAAGAGTGCGTGGA
GGAGACACCGAGTGCTCTGGGAGAGTGGAGATCTGGCACGCAGGCTCCTGGGGCACAGTGTGTGATGACT
CCTGGGACCTGGCCGAGGCGGAAGTGGTGTGTCAGCAGCTGGGCTGTGGCTCTGCTCTGGCTGCCCTGAG
GGACGCTTCGTTTGGCCAGGGAACTGGAACCATCTGGTTGGATGACATGCGGTGCAAAGGAAATGAGTCA
TTTCTATGGGACTGTCACGCCAAACCCTGGGGACAGAGTGACTGTGGACACAAGGAAGATGCTGGCGTGA
GGTGCTCTGGACAGTCGCTGAAATCACTGAATGCCTCCTCAGGTCATTTAGCACTTATTTTATCCAGTAT
CTTTGGGCTCCTTCTCCTGGTTCTGTTTATTCTATTTCTCACGTGGTGCCGAGTTCAGAAACAAAAACAT
CTGCCCCTCAGAGTTTCAACCAGAAGGAGGGGTTCTCTCGAGGAGAATTTATTCCATGAGATGGAGACCT
GCCTCAAGAGAGAGGACCCACATGGGACAAGAACCTCAGATGACACCCCCAACCATGGTTGTGAAGATGC
TAGCGACACATCGCTGTTGGGAGTTCTTCCTGCCTCTGAAGCCACAAAATGA

Translation (1463 aa):
MMLPQNSWHIDFGRCCCHQNLFSAVVTCILLLNSCFLISSFNGTDLELRLVNGDGPCSGTVEVKFQGQWG
TVCDDGWNTTASTVVCKQLGCPFSFAMFRFGQAVTRHGKIWLDDVSCYGNESALWECQHREWGSHNCYHG
EDVGVNCYGKSLTRVGRQGEANLGLRLVDGNNSCSGRVEVKFQERWGTICDDGWNLNTAAVVCRQLGCPS
SFISSGVVNSPAVLRPIWLDDILCQGNELALWNCRHRGWGNHDCSHNEDVTLTCYDSSDLELRLVGGTNR
CMGRVELKIQGRWGTVCHHKWNNAAADVVCKQLGCGTALHFAGLPHLQSGSDVVWLDGVSCSGNESFLWD
CRHSGTVNFDCLHQNDVSVICSDGADLELRLADGSNNCSGRVEVRIHEQWWTICDQNWKNEQALVVCKQL
GCPFSVFGSRRAKPSNEARDIWINSISCTGNESALWDCTYDGKAKRTCFRRSDAGVICSDKADLDLRLVG
AHSPCYGRLEVKYQGEWGTVCHDRWSTRNAAVVCKQLGCGKPLHVFGMTYFKEASGPIWLDDVSCIGNES
NIWDCEHSGWGKHNCVHREDVIVTCSGDATWGLRLVGGSNRCSGRLEVYFQGRWGTVCDDGWNSKAAAVV
CSQLDCPSSIIGMGLGNASTGYGKIWLDDVSCDGDESDLWSCRNSGWGNNDCSHSEDVGVICSDASDMEL
RLVGGSSRCAGKVEVNVQGAVGILCANGWGMNIAEVVCRQLECGSAIRVSREPHFTERTLHILMSNSGCT
GGEASLWDCIRWEWKQTACHLNMEASLICSAHRQPRLVGADMPCSGRVEVKHADTWRSVCDSDFSLHAAN
VLCRELNCGDAISLSVGDHFGKGNGLTWAEKFQCEGSETHLALCPIVQHPEDTCIHSREVGVVCSRYTDV
RLVNGKSQCDGQVEINVLGHWGSLCDTHWDPEDARVLCRQLSCGTALSTTGGKYIGERSVRVWGHRFHCL
GNESLLDNCQMTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLSAVPEGSALICLEDKRLRLVD
GDSRCAGRVEIYHDGFWGTICDDGWDLSDAHVVCQKLGCGVAFNATVSAHFGEGSGPIWLDDLNCTGMES
HLWQCPSRGWGQHDCRHKEDAGVICSEFTALRLYSETETESCAGRLEVFYNGTWGSVGRRNITTAIAGIV
CRQLGCGENGVVSLAPLSKTGSGFMWVDDIQCPKTHISIWQCLSAPWERRISSPAEETWITCEDRIRVRG
GDTECSGRVEIWHAGSWGTVCDDSWDLAEAEVVCQQLGCGSALAALRDASFGQGTGTIWLDDMRCKGNES
FLWDCHAKPWGQSDCGHKEDAGVRCSGQSLKSLNASSGHLALILSSIFGLLLLVLFILFLTWCRVQKQKH
LPLRVSTRRRGSLEENLFHEMETCLKREDPHGTRTSDDTPNHGCEDASDTSLLGVLPASEATK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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