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Report for CCDS11993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11993.1 Public Homo sapiens 18 CDH7 24 110 108 CCDS HistoryNCBI Gene:1005Re-query CCDS DB by CCDS ID:11993.1Re-query CCDS DB by GeneID:1005See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323011.7 ENSP00000319166.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323011.7Link to Ensembl Protein Viewer:ENSP00000319166.3Re-query CCDS DB by Nucleotide ID:ENST00000323011Re-query CCDS DB by Protein ID:ENSP00000319166
Original member Current member EBI ENST00000397968.4 ENSP00000381058.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397968.4Link to Ensembl Protein Viewer:ENSP00000381058.2Re-query CCDS DB by Nucleotide ID:ENST00000397968Re-query CCDS DB by Protein ID:ENSP00000381058
Original member Current member NCBI NM_001362438.2 NP_001349367.1 Accepted alive Link to Nucleotide Sequence:NM_001362438.2Link to Protein Sequence:NP_001349367.1Re-query CCDS DB by Nucleotide ID:NM_001362438Re-query CCDS DB by Protein ID:NP_001349367Link to BLAST:NP_001349367.1
Original member Current member NCBI NM_004361.5 NP_004352.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004361.5Link to Protein Sequence:NP_004352.2Re-query CCDS DB by Nucleotide ID:NM_004361Re-query CCDS DB by Protein ID:NP_004352Link to BLAST:NP_004352.2
Original member Current member NCBI NM_033646.4 NP_387450.1 Accepted alive Link to Nucleotide Sequence:NM_033646.4Link to Protein Sequence:NP_387450.1Re-query CCDS DB by Nucleotide ID:NM_033646Re-query CCDS DB by Protein ID:NP_387450Link to BLAST:NP_387450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349367.1 785 Q9ULB5 785 100% 0 0
NP_004352.2 785 Q9ULB5 785 100% 0 0
NP_387450.1 785 Q9ULB5 785 100% 0 0

Chromosomal Locations for CCDS 11993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65762843 65763052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65809704 65809998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65814485 65814604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65822081 65822248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65824644 65824831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65843812 65844065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65857816 65857952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65858925 65859046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65859708 65859825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65862666 65862917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65880401 65880894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGAAGTTGGGCAAAGTGGAGTTCTGCCATTTTCTGCAGCTAATAGCTCTTTTCCTGTGTTTTTCTGGGA
TGAGTCAAGCAGAACTCTCAAGGTCCAGATCAAAGCCCTATTTCCAATCAGGGAGGTCCCGGACCAAGCG
CAGCTGGGTGTGGAATCAGTTCTTTGTGCTGGAGGAATACATGGGTTCAGACCCCCTCTATGTAGGAAAG
CTTCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAATACATCTTGTCAGGCGAAGGGGCAAGTTCCA
TTTTCATTATTGATGAGAACACTGGGGATATTCATGCCACCAAGAGACTGGATCGTGAGGAGCAGGCCTA
CTACACGCTCCGAGCTCAAGCGCTGGATAGGCTCACCAACAAACCCGTGGAGCCCGAGTCGGAGTTTGTC
ATCAAAATTCAGGATATCAACGACAATGAACCCAAATTTTTGGATGGCCCATACACGGCAGGAGTTCCCG
AAATGTCTCCCGTGGGGACCTCAGTGGTACAAGTGACAGCGACGGATGCTGATGATCCTACATATGGCAA
CAGTGCCAGAGTGGTCTACAGTATTCTGCAAGGACAGCCGTACTTCTCAGTGGAGCCAAAGACAGGAGTC
ATCAAGACTGCCCTTCCAAACATGGATAGAGAGGCTAAAGACCAGTATTTGCTTGTCATTCAGGCAAAGG
ATATGGTTGGTCAAAATGGAGGACTGTCAGGAACTACATCAGTCACTGTGACCCTAACTGATGTCAACGA
TAATCCACCTCGCTTTCCTCGAAGGTCTTATCAATATAACGTCCCAGAGTCATTACCTGTAGCCTCAGTT
GTGGCCAGAATTAAAGCTGCTGATGCAGATATTGGAGCTAATGCTGAAATGGAGTACAAGATTGTGGATG
GTGATGGTTTGGGCATTTTTAAGATTTCTGTTGACAAAGAAACCCAGGAAGGAATCATTACTATACAGAA
GGAGCTGGATTTTGAAGCCAAAACAAGTTACACGCTACGGATAGAAGCTGCAAATAAAGATGCCGACCCT
CGCTTTCTGAGCTTGGGTCCGTTCAGTGACACGACAACTGTGAAGATAATTGTGGAAGATGTAGATGAGC
CCCCTGTGTTCTCTTCACCCTTGTACCCTATGGAGGTGTCGGAAGCTACCCAGGTTGGGAATATCATTGG
CACTGTAGCAGCTCATGACCCAGATTCTTCCAATAGCCCTGTGAGGTACTCAATTGACAGAAACACAGAC
TTGGAGAGATACTTCAATATTGATGCCAACAGTGGGGTCATCACAACTGCCAAGTCTTTGGATCGAGAGA
CAAATGCTATTCACAATATCACAGTCCTTGCAATGGAGAGCCAGAATCCATCTCAAGTAGGAAGAGGCTA
TGTGGCCATCACTATACTTGACATCAATGATAACGCCCCTGAATTTGCCATGGACTATGAGACCACCGTC
TGTGAAAATGCCCAGCCGGGGCAGGTTATCCAGAAAATCAGTGCTGTGGATAAAGATGAGCCATCCAATG
GACACCAGTTTTACTTCAGCTTAACAACGGATGCAACAAATAACCACAACTTTTCATTGAAAGATAACAA
AGACAACACAGCCTCAATACTGACCAGGAGAAACGGCTTCCGGAGACAGGAACAATCAGTTTACTATCTG
CCAATTTTCATTGTGGACAGTGGATCTCCCTCACTTAGCAGCACCAACACCCTCACCATCCGCGTGTGTG
ACTGTGATGCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGTCCTACCTGCTGGCCTCAGTAC
AGGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTATTGGTGTTGATCCTCCTTATCGTCACTATG
AGAAGACGGAAAAAAGAGCCCCTTATTTTTGACGAAGAAAGAGACATCAGAGAAAATATTGTGAGATACG
ATGACGAGGGCGGGGGAGAGGAGGACACGGAAGCGTTTGACATGGCTGCACTGAGAAACCTCAACGTCAT
CCGAGACACCAAGACCCGGAGGGATGTGACTCCAGAAATTCAATTCCTGAGTCGACCAGCTTTTAAAAGC
ATCCCAGATAATGTCATCTTTAGGGAATTTATTTGGGAAAGATTAAAAGAAGCCGATGTTGATCCTGGTG
CTCCTCCTTATGACTCCCTGCAGACATATGCTTTTGAAGGAAATGGCTCAGTTGCTGAATCACTCAGCTC
TTTAGATTCCATCAGCTCAAACTCTGATCAGAACTATGACTACCTAAGTGACTGGGGACCTCGCTTTAAA
CGACTCGCGGACATGTATGGGACTGGCCAAGAGAGTTTGTACTCATAG

Translation (785 aa):
MKLGKVEFCHFLQLIALFLCFSGMSQAELSRSRSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGK
LHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFV
IKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGV
IKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASV
VARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRIEAANKDADP
RFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTD
LERYFNIDANSGVITTAKSLDRETNAIHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTV
CENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYL
PIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTM
RRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVIRDTKTRRDVTPEIQFLSRPAFKS
IPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFK
RLADMYGTGQESLYS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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