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Report for CCDS7190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7190.1 Public Homo sapiens 10 CCNY 24 110 108 CCDS HistoryNCBI Gene:219771Re-query CCDS DB by CCDS ID:7190.1Re-query CCDS DB by GeneID:219771See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265375.13 ENSP00000265375.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265375.13Link to Ensembl Protein Viewer:ENSP00000265375.9Re-query CCDS DB by Nucleotide ID:ENST00000265375Re-query CCDS DB by Protein ID:ENSP00000265375
Original member Current member EBI ENST00000374706.5 ENSP00000363838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374706.5Link to Ensembl Protein Viewer:ENSP00000363838.1Re-query CCDS DB by Nucleotide ID:ENST00000374706Re-query CCDS DB by Protein ID:ENSP00000363838
Original member Current member NCBI NM_001282853.2 NP_001269782.1 Accepted alive Link to Nucleotide Sequence:NM_001282853.2Link to Protein Sequence:NP_001269782.1Re-query CCDS DB by Nucleotide ID:NM_001282853Re-query CCDS DB by Protein ID:NP_001269782Link to BLAST:NP_001269782.1
Original member Current member NCBI NM_181698.4 NP_859049.2 Accepted alive Link to Nucleotide Sequence:NM_181698.4Link to Protein Sequence:NP_859049.2Re-query CCDS DB by Nucleotide ID:NM_181698Re-query CCDS DB by Protein ID:NP_859049Link to BLAST:NP_859049.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269782.1 287 Q8ND76-3 287 100% 0 0
NP_859049.2 287 Q8ND76-3 287 100% 0 0

Chromosomal Locations for CCDS 7190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 35483412 35483478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35501501 35501535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35516523 35516623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35525964 35525999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35529973 35530030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35530124 35530243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35553019 35553185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35566023 35566185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 35569054 35569170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGAATTCAATCCTTCAGATCATCCTCGGGCCAGCACAATATTCCTCAGTAAATCTCAGACGGACGTGA
GAGAAAAACGCAAGAGTCTCTTCATTAACCATCATCCTCCAGGACAAATAGCAAGGAAATACAGTTCCTG
CTCCACCATTTTCCTAGATGATAGCACAGTCAGTCAACCAAACCTCAAGTATACAATTAAATGTGTCGCT
CTTGCAATATATTATCACATCAAAAACAGGGACCCAGATGGAAGGATGCTCTTAGATATTTTTGATGAAA
ATCTTCACCCTCTTTCGAAATCCGAAGTGCCACCAGATTATGACAAACACAACCCAGAGCAGAAGCAGAT
TTACCGGTTCGTTCGGACACTGTTCAGTGCTGCTCAGCTGACGGCTGAATGTGCCATCGTCACCCTGGTG
TACCTTGAAAGACTTTTAACATACGCAGAGATAGATATCTGTCCGGCCAACTGGAAGCGGATTGTTTTAG
GGGCGATCCTGCTGGCCTCCAAGGTGTGGGATGACCAGGCTGTATGGAATGTGGATTACTGCCAGATCCT
GAAAGACATCACGGTGGAGGACATGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTGCAGTTCAACATC
AATGTTCCTTCCAGTGTCTATGCCAAGTATTATTTTGATCTTCGTTCTCTGGCAGAAGCGAACAACCTGA
GCTTTCCCTTGGAGCCCCTGAGCAGGGAGAGGGCTCACAAGCTTGAGGCCATCTCTCGCCTCTGCGAGGA
CAAGTACAAGGACCTAAGAAGATCCGCGAGGAAGCGCTCAGCCAGTGCAGACAACCTGACTCTGCCCCGG
TGGTCCCCAGCCATCATCTCTTAA

Translation (287 aa):
MEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVA
LAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLV
YLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRSASADNLTLPR
WSPAIIS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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