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Report for CCDS13509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13509.1 Public Homo sapiens 20 DIDO1 24 110 108 CCDS HistoryNCBI Gene:11083Re-query CCDS DB by CCDS ID:13509.1Re-query CCDS DB by GeneID:11083See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13509.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354665.8 ENSP00000346692.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354665.8Link to Ensembl Protein Viewer:ENSP00000346692.4Re-query CCDS DB by Nucleotide ID:ENST00000354665Re-query CCDS DB by Protein ID:ENSP00000346692
Original member Current member EBI ENST00000370368.5 ENSP00000359394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370368.5Link to Ensembl Protein Viewer:ENSP00000359394.1Re-query CCDS DB by Nucleotide ID:ENST00000370368Re-query CCDS DB by Protein ID:ENSP00000359394
Original member Current member EBI ENST00000370371.8 ENSP00000359397.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370371.8Link to Ensembl Protein Viewer:ENSP00000359397.4Re-query CCDS DB by Nucleotide ID:ENST00000370371Re-query CCDS DB by Protein ID:ENSP00000359397
Original member Current member NCBI NM_022105.5 NP_071388.2 Accepted alive Link to Nucleotide Sequence:NM_022105.5Link to Protein Sequence:NP_071388.2Re-query CCDS DB by Nucleotide ID:NM_022105Re-query CCDS DB by Protein ID:NP_071388Link to BLAST:NP_071388.2
Original member Current member NCBI NM_080796.4 NP_542986.1 Accepted alive Link to Nucleotide Sequence:NM_080796.4Link to Protein Sequence:NP_542986.1Re-query CCDS DB by Nucleotide ID:NM_080796Re-query CCDS DB by Protein ID:NP_542986Link to BLAST:NP_542986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071388.2 562 Q9BTC0-3 562 100% 0 0
NP_542986.1 562 Q9BTC0-3 562 100% 0 0

Chromosomal Locations for CCDS 13509.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62905786 62906100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62907147 62907359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62909699 62910020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62910774 62911612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGACGACAAAGGCGACCCGAGCAATGAGGAGGCACCTAAGGCCATCAAACCCACCAGCAAAGAGTTCA
GGAAAACATGGGGTTTTCGAAGGACCACTATCGCCAAGCGAGAGGGCGCAGGGGACGCGGAGGCTGACCC
ACTGGAGCCGCCACCCCCACAGCAGCAGCTGGGCCTGTCCCTGCGGCGCAGTGGGAGGCAGCCCAAGCGC
ACTGAGCGCGTGGAGCAGTTCCTGACCATTGCGCGGCGCCGCGGCAGGAGGAGCATGCCTGTCTCCCTGG
AGGATTCTGGTGAGCCCACGTCCTGCCCCGCCACAGACGCCGAGACAGCCTCCGAGGGCAGCGTGGAAAG
CGCTTCTGAGACCAGAAGCGGCCCCCAGTCTGCTTCCACAGCTGTGAAGGAACGACCAGCCTCTTCTGAA
AAGGTGAAAGGAGGGGATGACCACGATGACACCTCCGATAGTGACAGCGATGGCCTGACCTTGAAAGAGC
TTCAGAATCGCCTTCGCAGGAAGCGGGAACAGGAGCCCACTGAGAGGCCCCTGAAAGGGATCCAGAGTCG
CCTGCGGAAGAAGCGCCGGGAGGAGGGTCCCGCCGAGACTGTGGGCTCCGAGGCCAGTGACACTGTGGAG
GGCGTCCTGCCCAGTAAGCAGGAGCCCGAGAACGATCAGGGGGTTGTGTCCCAGGCTGGGAAAGATGACA
GAGAGAGTAAGTTGGAGGGAAAGGCGGCTCAGGACATCAAAGATGAGGAGCCTGGAGACTTGGGCCGACC
GAAGCCTGAATGTGAGGGTTACGACCCCAACGCCCTGTATTGCATTTGCCGCCAGCCTCACAACAACAGG
TTTATGATTTGCTGTGACCGCTGTGAAGAATGGTTTCATGGCGATTGTGTGGGCATTTCTGAGGCTCGAG
GGAGGCTTTTGGAAAGGAATGGGGAAGACTATATCTGCCCAAACTGCACCATTCTGCAAGTGCAGGATGA
GACTCATTCAGAAACGGCAGATCAGCAGGAAGCTAAATGGAGACCTGGAGATGCTGATGGCACCGATTGT
ACAAGTATAGGAACAATAGAGCAGAAGTCTAGCGAAGACCAAGGGATAAAGGGTAGAATTGAGAAAGCTG
CAAATCCAAGTGGCAAGAAGAAACTCAAGATCTTCCAGCCTGTGATAGAGGCGCCTGGTGCCTCAAAATG
TATTGGCCCCGGGTGCTGTCACGTGGCGCAGCCCGACTCGGTGTACTGCAGTAATGACTGTATCCTCAAA
CACGCCGCAGCGACAATGAAGTTTCTAAGCTCAGGTAAAGAACAGAAGCCAAAGCCTAAAGAAAAGATGA
AGATGAAGCCAGAGAAGCCCAGTCTTCCGAAATGCGGTGCTCAGGCAGGTATTAAAATCTCTTCTGTGCA
CAAGAGACCAGCTCCAGAAAAAAAAGAGACCACAGTGAAGAAGGCAGTGGTGGTCCCTGCGCGGAGTGAA
GCACTCGGGAAGGAAGCAGCTTGTGAGAGCAGCACGCCGTCGTGGGCGAGCGATCACAATTACAATGCAG
TAAAGCCAGAAAAGACTGCTGCTCCCTCGCCGTCACTGTTGTATAAATGTATGTATCACCTAGGGGTTGG
CCTCCTGGACCCCTCCCGTTCTTTCTGGATAGCCATCCCCTGGGCCTGTCCAGGACTGGGAGTTGCAGCT
TTGTGTTAA

Translation (562 aa):
MDDKGDPSNEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKR
TERVEQFLTIARRRGRRSMPVSLEDSGEPTSCPATDAETASEGSVESASETRSGPQSASTAVKERPASSE
KVKGGDDHDDTSDSDSDGLTLKELQNRLRRKREQEPTERPLKGIQSRLRKKRREEGPAETVGSEASDTVE
GVLPSKQEPENDQGVVSQAGKDDRESKLEGKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHNNR
FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGDADGTDC
TSIGTIEQKSSEDQGIKGRIEKAANPSGKKKLKIFQPVIEAPGASKCIGPGCCHVAQPDSVYCSNDCILK
HAAATMKFLSSGKEQKPKPKEKMKMKPEKPSLPKCGAQAGIKISSVHKRPAPEKKETTVKKAVVVPARSE
ALGKEAACESSTPSWASDHNYNAVKPEKTAAPSPSLLYKCMYHLGVGLLDPSRSFWIAIPWACPGLGVAA
LC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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