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Report for CCDS69190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69190.1 Public Homo sapiens 6 SMPDL3A 24 110 108 CCDS HistoryNCBI Gene:10924Re-query CCDS DB by CCDS ID:69190.1Re-query CCDS DB by GeneID:10924See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 69190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539041.5 ENSP00000442152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539041.5Link to Ensembl Protein Viewer:ENSP00000442152.1Re-query CCDS DB by Nucleotide ID:ENST00000539041Re-query CCDS DB by Protein ID:ENSP00000442152
Original member Current member NCBI NM_001286138.2 NP_001273067.1 Accepted alive Link to Nucleotide Sequence:NM_001286138.2Link to Protein Sequence:NP_001273067.1Re-query CCDS DB by Nucleotide ID:NM_001286138Re-query CCDS DB by Protein ID:NP_001273067Link to BLAST:NP_001273067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273067.1 322 Q92484-2 322 100% 0 0

Chromosomal Locations for CCDS 69190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122796891 122796968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122801310 122801406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122803664 122803833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122804909 122805089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122806233 122806357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122809091 122809408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGACAACCACCATCCAGAGTCTCTTTCCAAATCTCCAGGTTTTCCCTGCGCTGGGTAATCATGACTATT
GGCCACAGGATCAACTGCCTGTAGTCACCAGTAAAGTGTACAATGCAGTAGCAAACCTCTGGAAACCATG
GCTAGATGAAGAAGCTATTAGTACTTTAAGGAAAGGTGGTTTTTATTCACAGAAAGTTACAACTAATCCA
AACCTTAGGATCATCAGTCTAAACACAAACTTGTACTACGGCCCAAATATAATGACACTGAACAAGACTG
ACCCAGCCAACCAGTTTGAATGGCTAGAAAGTACATTGAACAACTCTCAGCAGAATAAGGAGAAGGTGTA
TATCATAGCACATGTTCCAGTGGGGTATCTGCCATCTTCACAGAACATCACAGCAATGAGAGAATACTAT
AATGAGAAATTGATAGATATTTTTCAAAAATACAGTGATGTCATTGCAGGACAATTTTATGGACACACTC
ACAGAGACAGCATTATGGTTCTTTCAGATAAAAAAGGAAGTCCAGTAAATTCTTTGTTTGTGGCTCCTGC
TGTTACACCAGTGAAGAGTGTTTTAGAAAAACAGACCAACAATCCTGGTATCAGACTGTTTCAGTATGAT
CCTCGTGATTATAAATTATTGGATATGTTGCAGTATTACTTGAATCTGACAGAGGCGAATCTAAAGGGAG
AGTCCATCTGGAAGCTGGAGTATATCCTGACCCAGACCTACGACATTGAAGATTTGCAGCCGGAAAGTTT
ATATGGATTAGCTAAACAATTTACAATCCTAGACAGTAAGCAGTTTATAAAATACTACAATTACTTCTTT
GTGAGTTATGACAGCAGTGTAACATGTGATAAGACATGTAAGGCCTTTCAGATTTGTGCAATTATGAATC
TTGATAATATTTCCTATGCAGATTGCCTCAAACAGCTTTATATAAAGCACAATTACTAG

Translation (322 aa):
MTTTIQSLFPNLQVFPALGNHDYWPQDQLPVVTSKVYNAVANLWKPWLDEEAISTLRKGGFYSQKVTTNP
NLRIISLNTNLYYGPNIMTLNKTDPANQFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYY
NEKLIDIFQKYSDVIAGQFYGHTHRDSIMVLSDKKGSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQYD
PRDYKLLDMLQYYLNLTEANLKGESIWKLEYILTQTYDIEDLQPESLYGLAKQFTILDSKQFIKYYNYFF
VSYDSSVTCDKTCKAFQICAIMNLDNISYADCLKQLYIKHNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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