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Report for CCDS31267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31267.1 Public Homo sapiens 10 R3HCC1L 24 110 108 CCDS HistoryNCBI Gene:27291Re-query CCDS DB by CCDS ID:31267.1Re-query CCDS DB by GeneID:27291See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298999.8 ENSP00000298999.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298999.8Link to Ensembl Protein Viewer:ENSP00000298999.3Re-query CCDS DB by Nucleotide ID:ENST00000298999Re-query CCDS DB by Protein ID:ENSP00000298999
Original member Current member EBI ENST00000314594.6 ENSP00000314018.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314594.6Link to Ensembl Protein Viewer:ENSP00000314018.6Re-query CCDS DB by Nucleotide ID:ENST00000314594Re-query CCDS DB by Protein ID:ENSP00000314018
Original member Current member EBI ENST00000370584.7 ENSP00000359616.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370584.7Link to Ensembl Protein Viewer:ENSP00000359616.3Re-query CCDS DB by Nucleotide ID:ENST00000370584Re-query CCDS DB by Protein ID:ENSP00000359616
Original member Current member NCBI NM_001256620.2 NP_001243549.2 Accepted alive Link to Nucleotide Sequence:NM_001256620.2Link to Protein Sequence:NP_001243549.2Re-query CCDS DB by Nucleotide ID:NM_001256620Re-query CCDS DB by Protein ID:NP_001243549Link to BLAST:NP_001243549.2
Original member Current member NCBI NM_001351010.2 NP_001337939.2 Accepted alive Link to Nucleotide Sequence:NM_001351010.2Link to Protein Sequence:NP_001337939.2Re-query CCDS DB by Nucleotide ID:NM_001351010Re-query CCDS DB by Protein ID:NP_001337939Link to BLAST:NP_001337939.2
Original member Current member NCBI NM_001351011.2 NP_001337940.2 Accepted alive Link to Nucleotide Sequence:NM_001351011.2Link to Protein Sequence:NP_001337940.2Re-query CCDS DB by Nucleotide ID:NM_001351011Re-query CCDS DB by Protein ID:NP_001337940Link to BLAST:NP_001337940.2
Original member Current member NCBI NM_001351012.2 NP_001337941.2 Accepted alive Link to Nucleotide Sequence:NM_001351012.2Link to Protein Sequence:NP_001337941.2Re-query CCDS DB by Nucleotide ID:NM_001351012Re-query CCDS DB by Protein ID:NP_001337941Link to BLAST:NP_001337941.2
Original member Current member NCBI NM_001351013.2 NP_001337942.2 Accepted alive Link to Nucleotide Sequence:NM_001351013.2Link to Protein Sequence:NP_001337942.2Re-query CCDS DB by Nucleotide ID:NM_001351013Re-query CCDS DB by Protein ID:NP_001337942Link to BLAST:NP_001337942.2
Original member Current member NCBI NM_001351014.2 NP_001337943.2 Accepted alive Link to Nucleotide Sequence:NM_001351014.2Link to Protein Sequence:NP_001337943.2Re-query CCDS DB by Nucleotide ID:NM_001351014Re-query CCDS DB by Protein ID:NP_001337943Link to BLAST:NP_001337943.2
Original member Current member NCBI NM_001351015.2 NP_001337944.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351015.2Link to Protein Sequence:NP_001337944.2Re-query CCDS DB by Nucleotide ID:NM_001351015Re-query CCDS DB by Protein ID:NP_001337944Link to BLAST:NP_001337944.2
Original member Current member NCBI NM_001351016.2 NP_001337945.2 Accepted alive Link to Nucleotide Sequence:NM_001351016.2Link to Protein Sequence:NP_001337945.2Re-query CCDS DB by Nucleotide ID:NM_001351016Re-query CCDS DB by Protein ID:NP_001337945Link to BLAST:NP_001337945.2
Original member Current member NCBI NM_001351017.2 NP_001337946.2 Accepted alive Link to Nucleotide Sequence:NM_001351017.2Link to Protein Sequence:NP_001337946.2Re-query CCDS DB by Nucleotide ID:NM_001351017Re-query CCDS DB by Protein ID:NP_001337946Link to BLAST:NP_001337946.2
Original member Current member NCBI NM_014472.5 NP_055287.5 Accepted alive Link to Nucleotide Sequence:NM_014472.5Link to Protein Sequence:NP_055287.5Re-query CCDS DB by Nucleotide ID:NM_014472Re-query CCDS DB by Protein ID:NP_055287Link to BLAST:NP_055287.5
Original member Current member NCBI NM_138469.3 NP_612478.3 Accepted alive Link to Nucleotide Sequence:NM_138469.3Link to Protein Sequence:NP_612478.3Re-query CCDS DB by Nucleotide ID:NM_138469Re-query CCDS DB by Protein ID:NP_612478Link to BLAST:NP_612478.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243549.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337939.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337940.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337941.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337942.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337943.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337944.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337945.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_001337946.2 778 Q7Z5L2-2 778 99.8715% 0 1
NP_055287.5 778 Q7Z5L2-2 778 99.8715% 0 1
NP_612478.3 778 Q7Z5L2-2 778 99.8715% 0 1

Chromosomal Locations for CCDS 31267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98208115 98209899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98231512 98231687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98234446 98234516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98235425 98235520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98236024 98236164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98244091 98244158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGCAGCAAGAATCAGAGAGATGCAGAGTTAGAGCCAGAAGGCCTGACATGGCACTTTATGTACCTAAAG
CTCGTAGGGGTGCAGTACTCCTTAAGACAGGTGATGAAGAAGAAAGCTGTGGTTCACCTAACTCTGTGGT
GAAAGAAAAGCAAAAAGAAAGTTCTCTCTCCCAAAAAGAAGTCTTTAAAGACAAACCGGAGGCTCGAAGA
CTAAATATCAATCCTGATAGAAAGGAGCATAATTGTAGAGAAGAAAAGAAATCTTCAACAAAATTAAGAA
TGGACACATGCCTTCAAAAAACAAATAGAGTTTGTTCTAAGAGAGGAACCACTGAATCCAAAGAAGTATT
ATCCCAAGGACAACAGCAGGGAGCCCCAAATGCTGGGGTTATAACTAATGCACCTTTGCAGAGACATTTT
AAACCAAAGAAGGTGGAGTGTTTGGAAGTTGAAACTACGGATGTGACAGGACATGAGAGGATACTTCTTT
CACAGGCCTGTTTAGAAATCAGCGAGGCTCAAGTTCCAAGCAAACCATTCCAAAATGTGGAATTCTGTGA
CTTCAGTAGGCATGAACCTGATGGGGAAGCATTTGAAGACAAAGATTTGGAAGGCAGAATTGAAACTGAT
ACCAAGGTTTTGGAGATACTATATGAGTTTCCTAGAGTTTTTAGTTCTGTCATGAAACCTGAGAATATGA
TTGTACCAATAAAACTAAGCTCTGATTCTGAAATTGTACAACAAAGCATGCAAACATCAGATGGAATATT
GAATCCCAGCAGCGGAGGCATCACCACTACTTCTGTTCCTGGAAGTCCAGATGGTGTCTTTGATCAAACT
TGCGTAGATTTTGAAGTTGAGAGTGTAGGTGGTATAGCCAATAGTACAGGTTTCATCTTAGATCAAAAAG
ATACAGATTCCATTCCTGCAACTATGGGTCACATCTCTCTGTCAGAGAGCACAAATGACACTGTTAGTCC
AGTAATGATTAGAGAATGTGAGAAGAATGACAGCACTGCTGATGAGTTACATGTAAAGCACGAACCTCCT
GATACAGCTGTCCTTGCTCATGAAACACATAGAGATAGTGGATTTAAGAATGTAGGTGACATTACCAATA
AAGCATGTATGATGGACACTACAGGTATGTCCTGTAGTGATCATGTAACTGTTGATAGCCCTTATGTAGT
TGCAGTTAGAATAGCTGATGAGACCTCTATTAATACACGAAGTTTCTCAAAGTTTGTAGGAATGAGTGCA
GATGCAACCCCTCTTCATGTAGCTAGAAGTGGGAATGACACTGAAGATTTCAGCAACCCTTCTGCTTGCT
CAGATATTTATGGTGAGAGTATTTCATCTCATTTTACAGAGTCAACAGGAAAGTTGATAGAGAGCTTGTC
AGATTGTGCTTCCTCCTTACCTATAAAAAAGATTGCTGGTAGTAATTATAACACTTTTTTGGACTCTGAA
CTCAGTATGTTAAATGGGACAAAAGTTCTTTCAGACAGTGCCGTGGGCATTGACCTGGGTAGTACTGGTG
ATACAACAGAAGCATTGCACGAACTAAGAACTGCCGAAGAGTTCAAAACAGAAGAGCAAGATGACTCAGG
GAGTATAGAATTTGGTGTATCTTTTCCTGATAGGGAATCATCATCTATGGAAACATCCATCGAACCAAAA
GCAACTGAAACTTCTCACACAGAGGGAATTACTGCCATTGAGGAGAGCTGGGAGTCTATGTTTAACGATG
ATGGTGACTGCCTGGATCCACGTCTTCTACAAGAGTTATCAGGGAATACCAAGAGCAGAGAGAGCATCCA
GGAACCTAGATCTGATTACTACAATCATGAAGTTCCTGATATTGACCTCAGTGATTGTGAATTCCCACAT
GTCATTGAAATTTATGACTTTCCCCAAGAATTTCATACTGAAGACCTTCTACGGGTTTTCTGCAGTTATC
AAAAGAAAGGATTTGATATTAAATGGGTGGATGATACACATGCCCTAGGAGTATTCTCCAGTCCAATTAC
AGCTCGTGATGCGTTGGGTATTAAACACACCATGGTGAAGATTCGTCCCTTGTCACAGGCCACAAGAGCA
GCCAAGGCCAAAGCTAGAGCTTATGCTGAGTTCCTCCAGCCAGCAAAGGAGCGTCCTGAGACTTCAGCAG
CCCTAGCCAGAAGGTTAGTCATCAGTGCCCTTGGGGTTCGAAGTAAGCAGAGCAAAACCGAACGAGAAGC
AGAGCTCAAGAAACTGCAAGAAGCCAGAGAGAGAAAGCGGTTGGAAGCCAAGCAACGGGAAGACATCTGG
GAAGGCAGAGACCAGTCTACAGTTTGA

Translation (778 aa):
MQQESERCRVRARRPDMALYVPKARRGAVLLKTGDEEESCGSPNSVVKEKQKESSLSQKEVFKDKPEARR
LNINPDRKEHNCREEKKSSTKLRMDTCLQKTNRVCSKRGTTESKEVLSQGQQQGAPNAGVITNAPLQRHF
KPKKVECLEVETTDVTGHERILLSQACLEISEAQVPSKPFQNVEFCDFSRHEPDGEAFEDKDLEGRIETD
TKVLEILYEFPRVFSSVMKPENMIVPIKLSSDSEIVQQSMQTSDGILNPSSGGITTTSVPGSPDGVFDQT
CVDFEVESVGGIANSTGFILDQKDTDSIPATMGHISLSESTNDTVSPVMIRECEKNDSTADELHVKHEPP
DTAVLAHETHRDSGFKNVGDITNKACMMDTTGMSCSDHVTVDSPYVVAVRIADETSINTRSFSKFVGMSA
DATPLHVARSGNDTEDFSNPSACSDIYGESISSHFTESTGKLIESLSDCASSLPIKKIAGSNYNTFLDSE
LSMLNGTKVLSDSAVGIDLGSTGDTTEALHELRTAEEFKTEEQDDSGSIEFGVSFPDRESSSMETSIEPK
ATETSHTEGITAIEESWESMFNDDGDCLDPRLLQELSGNTKSRESIQEPRSDYYNHEVPDIDLSDCEFPH
VIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRA
AKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQEARERKRLEAKQREDIW
EGRDQSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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