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Report for CCDS31335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31335.1 Public Homo sapiens 11 LSP1 24 110 108 CCDS HistoryNCBI Gene:4046Re-query CCDS DB by CCDS ID:31335.1Re-query CCDS DB by GeneID:4046See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405957.6 ENSP00000383932.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405957.6Link to Ensembl Protein Viewer:ENSP00000383932.2Re-query CCDS DB by Nucleotide ID:ENST00000405957Re-query CCDS DB by Protein ID:ENSP00000383932
Original member Current member EBI ENST00000406638.6 ENSP00000384022.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406638.6Link to Ensembl Protein Viewer:ENSP00000384022.2Re-query CCDS DB by Nucleotide ID:ENST00000406638Re-query CCDS DB by Protein ID:ENSP00000384022
Original member Current member EBI ENST00000612798.4 ENSP00000484140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612798.4Link to Ensembl Protein Viewer:ENSP00000484140.1Re-query CCDS DB by Nucleotide ID:ENST00000612798Re-query CCDS DB by Protein ID:ENSP00000484140
Original member Current member NCBI NM_001013253.2 NP_001013271.1 Accepted alive Link to Nucleotide Sequence:NM_001013253.2Link to Protein Sequence:NP_001013271.1Re-query CCDS DB by Nucleotide ID:NM_001013253Re-query CCDS DB by Protein ID:NP_001013271Link to BLAST:NP_001013271.1
Original member Current member NCBI NM_001013254.1 NP_001013272.1 Accepted alive Link to Nucleotide Sequence:NM_001013254.1Link to Protein Sequence:NP_001013272.1Re-query CCDS DB by Nucleotide ID:NM_001013254Re-query CCDS DB by Protein ID:NP_001013272Link to BLAST:NP_001013272.1
Original member Current member NCBI NM_001013255.1 NP_001013273.1 Accepted alive Link to Nucleotide Sequence:NM_001013255.1Link to Protein Sequence:NP_001013273.1Re-query CCDS DB by Nucleotide ID:NM_001013255Re-query CCDS DB by Protein ID:NP_001013273Link to BLAST:NP_001013273.1
Original member Current member NCBI NM_001289005.2 NP_001275934.1 Accepted alive Link to Nucleotide Sequence:NM_001289005.2Link to Protein Sequence:NP_001275934.1Re-query CCDS DB by Nucleotide ID:NM_001289005Re-query CCDS DB by Protein ID:NP_001275934Link to BLAST:NP_001275934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013271.1 277 P33241-2 277 100% 0 0
NP_001013272.1 277 P33241-2 277 100% 0 0
NP_001013273.1 277 P33241-2 277 100% 0 0
NP_001275934.1 277 P33241-2 277 100% 0 0

Chromosomal Locations for CCDS 31335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 1880220 1880224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1881432 1881596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1883419 1883560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1883932 1884024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1884280 1884323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1884500 1884581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1886732 1886866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1887237 1887314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1887474 1887563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGCTCCTCAGCCTGAAGCCCTCGGAGGCCCCTGAACTGGATGAGGACGAGGGCTTTGGCGACTGGTCCC
AGAGGCCAGAGCAGCGGCAGCAGCACGAGGGGGCGCAGGGCGCCTTGGACAGCGGAGAGCCCCCCCAGTG
CAGGAGTCCTGAGGGGGAGCAAGAGGACAGGCCCGGCCTGCATGCCTACGAAAAGGAGGACAGTGATGAA
GTCCACCTGGAGGAGTTGAGTCTGAGCAAGGAGGGGCCAGGCCCAGAGGACACTGTCCAGGACAACCTGG
GGGCCGCAGGGGCTGAGGAGGAACAGGAGGAGCACCAGAAATGTCAGCAGCCCAGGACACCCAGCCCCTT
GGTCTTGGAGGGGACCATCGAACAGAGCTCGCCTCCCCTGAGCCCTACCACCAAACTCATCGACAGGACC
GAGTCCCTAAACCGCTCCATAGAGAAGAGTAACAGTGTGAAGAAATCCCAGCCAGACTTGCCCATCTCCA
AGATTGATCAGTGGCTGGAACAATACACCCAGGCCATCGAGACCGCTGGCCGGACCCCCAAGCTAGCCCG
CCAGGCCTCCATAGAGCTGCCCAGCATGGCTGTGGCCAGTACCAAGAGTCGGTGGGAGACGGGTGAGGTA
CAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGGATATTGTGGCTGGAGACATGAGCAAGAAAAGCC
TCTGGGAGCAGAAGGGAGGCTCCAAGACCTCATCAACAATTAAGAGCACCCCATCTGGGAAGAGGTATAA
GTTTGTGGCCACCGGGCATGGGAAGTATGAGAAGGTGCTTGTGGAAGGGGGCCCGGCTCCCTAG

Translation (277 aa):
MLLSLKPSEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQEDRPGLHAYEKEDSDE
VHLEELSLSKEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTPSPLVLEGTIEQSSPPLSPTTKLIDRT
ESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQAIETAGRTPKLARQASIELPSMAVASTKSRWETGEV
QAQSAAKTPSCKDIVAGDMSKKSLWEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVEGGPAP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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