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Report for CCDS33480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33480.1 Public Homo sapiens 20 ZNF334 24 110 108 CCDS HistoryNCBI Gene:55713Re-query CCDS DB by CCDS ID:33480.1Re-query CCDS DB by GeneID:55713See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33480.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347606.8 ENSP00000255129.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347606.8Link to Ensembl Protein Viewer:ENSP00000255129.5Re-query CCDS DB by Nucleotide ID:ENST00000347606Re-query CCDS DB by Protein ID:ENSP00000255129
Original member Current member EBI ENST00000692313.1 ENSP00000510334.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692313.1Link to Ensembl Protein Viewer:ENSP00000510334.1Re-query CCDS DB by Nucleotide ID:ENST00000692313Re-query CCDS DB by Protein ID:ENSP00000510334
Original member Current member NCBI NM_001353824.2 NP_001340753.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353824.2Link to Protein Sequence:NP_001340753.1Re-query CCDS DB by Nucleotide ID:NM_001353824Re-query CCDS DB by Protein ID:NP_001340753Link to BLAST:NP_001340753.1
Original member Current member NCBI NM_018102.6 NP_060572.3 Accepted alive Link to Nucleotide Sequence:NM_018102.6Link to Protein Sequence:NP_060572.3Re-query CCDS DB by Nucleotide ID:NM_018102Re-query CCDS DB by Protein ID:NP_060572Link to BLAST:NP_060572.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340753.1 680 Q9HCZ1 680 100% 0 0
NP_060572.3 680 Q9HCZ1 680 100% 0 0

Chromosomal Locations for CCDS 33480.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46501296 46503097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46504214 46504306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46504614 46504740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46512082 46512102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGAAAATGAAAAAATTTCAGATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAAT
GGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGT
CTCTGTGGGGTATCATGTTAGCAAACCAGATGTGATTTTCAAATTGGAGCAAGGAGAAGAGCCATGGATA
GTGGAGGAATTCTCAAATCAGAACTACCCAGACATTGATGATGCCTTAGAGAAGAACAAGGAAATCCAAG
ATAAACATTTGACACAAACTGTATTCTTCAGCAACAAAACACTGATTACAGAAAGAGAGAATGTATTTGG
GAAAACACTTAATCTGGGCATGAATAGTGTTCCCTCAAGAAAAATGCCCTATAAATGTAATCCAGGAGGA
AACAGTTTGAAAACTAATTCAGAAGTAATTGTTGCAAAGAAAAGCAAAGAAAACAGAAAGATTCCTGATG
GATACAGTGGATTTGGGAAGCATGAGAAAAGTCATTTGGGAATGAAAAAATACAGATACAATCCAATGAG
GAAAGCCAGCAATCAAAACGAAAATCTTATTCTGCACCAGAACATTCAGATTTTGAAACAACCGTTTGAC
TATAATAAATGTGGGAAAACCTTCTTCAAGAGGGCAATTCTCATTACACAAAAGGGGAGACAGACTGAAA
GGAAACCAAATGAATGTAATGAATGTAGGAAAACCTTTTCTAAGAGATCTACCCTCATTGTACATCAGAG
AATTCATACAGGGGAGAAACCGTATGTTTGTAGTGATTGTAGGAAAACTTTTCGTGTGAAGACAAGCCTC
ACTCGACACCGAAGAATTCATACTGGAGAGAGACCCTATGAATGCAGTGAATGCAGGAAAACCTTCATTG
ACAAATCTGCCCTTATTGTACACCAGAAAATTCATGGAGGGGAGAAATCCTATGAGTGTAATGAATGTGG
AAAGACCTTTTTTCGGAAGTCAGCCCTGGCTGAACATTTCAGGTCACACACAGGGGAGAAGCCTTACGAA
TGCAAGGAATGTGGAAATGCCTTCAGCAAGAAATCGTATCTTGTTGTACATCAAAGAACTCACAGAGGAG
AGAAGCCAAATGAATGTAAGGAATGTGGGAAAACCTTCTTCTGTCAGTCAGCCCTTACTGCGCATCAGAG
AATTCACACAGGGGAAAAACCCTATGAATGTAGTGAATGTGAGAAAACCTTCTTTTGTCAATCTGCCCTC
AATGTGCATCGAAGAAGTCATACAGGAGAGAAGCCCTATGAATGCAGTCAATGTGGAAAATTTTTATGTA
CGAAATCAGCCCTCATTGCACATCAGATAACTCATAGAGGAAAGAAGTCTTATGAATGTAATGAATGTGG
GAAATTTTTCTGCCATAAGTCAACACTCACTATACATCAGAGAACACACACAGGAGAGAAACATGGTGTG
TTTAATAAATGTGGTAGAATCTCCATTGTGAAGTCAAACTGCAGTCAGTGTAAGAGAATGAACACAAAGG
AGAATCTTTATGAGTGTAGTGAACATGGGCATGCCGTCAGCAAAAACTCACACCTCATTGTACATCAGAG
AACTATATGGGAGAGACCATATGAATGCAATGAATGTGGGAGAACCTACTGCAGGAAGTCAGCCCTGACT
CACCATCAGAGAACACACACAGGACAGAGACCCTATGAGTGTAATGAATGTGGGAAAACCTTCTGTCAGA
AGTTCTCCTTTGTTGAACATCAGCGAACTCACACTGGGGAGAAACCATATGAATGTAATGAATGTGGGAA
ATCCTTCTGCCATAAGTCAGCCTTCAGAGTCCATAGAAGAATTCACACAGGAGAGAAACCATATGAATGT
AATCAATGTGGGAAAACCTACCGTCGCCTGTGGACTCTCACTGAACATCAGAAAATACACACAGGAGAGA
AACCTTATGAATGTAACAAATGTGAGAAAACATTTCGCCACAAATCAAACTTTCTTTTACATCAGAAATC
CCACAAGGAATAA

Translation (680 aa):
MKMKKFQIPVSFQDLTVNFTQEEWQQLDPAQRLLYRDVMLENYSNLVSVGYHVSKPDVIFKLEQGEEPWI
VEEFSNQNYPDIDDALEKNKEIQDKHLTQTVFFSNKTLITERENVFGKTLNLGMNSVPSRKMPYKCNPGG
NSLKTNSEVIVAKKSKENRKIPDGYSGFGKHEKSHLGMKKYRYNPMRKASNQNENLILHQNIQILKQPFD
YNKCGKTFFKRAILITQKGRQTERKPNECNECRKTFSKRSTLIVHQRIHTGEKPYVCSDCRKTFRVKTSL
TRHRRIHTGERPYECSECRKTFIDKSALIVHQKIHGGEKSYECNECGKTFFRKSALAEHFRSHTGEKPYE
CKECGNAFSKKSYLVVHQRTHRGEKPNECKECGKTFFCQSALTAHQRIHTGEKPYECSECEKTFFCQSAL
NVHRRSHTGEKPYECSQCGKFLCTKSALIAHQITHRGKKSYECNECGKFFCHKSTLTIHQRTHTGEKHGV
FNKCGRISIVKSNCSQCKRMNTKENLYECSEHGHAVSKNSHLIVHQRTIWERPYECNECGRTYCRKSALT
HHQRTHTGQRPYECNECGKTFCQKFSFVEHQRTHTGEKPYECNECGKSFCHKSAFRVHRRIHTGEKPYEC
NQCGKTYRRLWTLTEHQKIHTGEKPYECNKCEKTFRHKSNFLLHQKSHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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