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Report for CCDS46780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46780.1 Public Homo sapiens 3 OXSM 24 110 108 CCDS HistoryNCBI Gene:54995Re-query CCDS DB by CCDS ID:46780.1Re-query CCDS DB by GeneID:54995See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420173.2 ENSP00000411303.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420173.2Link to Ensembl Protein Viewer:ENSP00000411303.2Re-query CCDS DB by Nucleotide ID:ENST00000420173Re-query CCDS DB by Protein ID:ENSP00000411303
Original member Current member NCBI NM_001145391.2 NP_001138863.1 Accepted alive Link to Nucleotide Sequence:NM_001145391.2Link to Protein Sequence:NP_001138863.1Re-query CCDS DB by Nucleotide ID:NM_001145391Re-query CCDS DB by Protein ID:NP_001138863Link to BLAST:NP_001138863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138863.1 376 Q9NWU1-2 376 100% 0 0

Chromosomal Locations for CCDS 46780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 25791021 25791696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25791946 25791997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25794092 25794494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGTCCAACTGCCTGCAAAATTTCCTGAAAATTACAAGCACTCGTCTTCTATGTTCAAGATTATGCCAAC
AGTTAAGAAGTAAAAGGAAGTTTTTCGGAACTGTGCCAATATCCAGATTGCATAGGCGAGTTGTCATTAC
AGGCATTGGCTTAGTGACTCCTCTTGGTGTTGGAACTCACCTGGTTTGGGATCGTCTTATCGGAGGAGAG
AGTGGAATTGTTTCACTGGTTGGTGAAGAGTATAAGAGTATCCCTTGCAGTGTTGCTGCTTATGTGCCAA
GAGGTAGTGATGAAGGTCAGTTCAATGAACAAAACTTTGTGTCCAAATCAGATATCAAGTCCATGTCTTC
TCCCACCATCATGGCCATTGGGGCTGCAGAATTAGCCATGAAGGATTCTGGCTGGCATCCTCAGTCAGAA
GCTGATCAAGTGGCTACTGGTGTTGCAATTGGCATGGGAATGATTCCTCTTGAAGTTGTTTCTGAAACTG
CTTTGAATTTTCAGACAAAAGGTTACAATAAAGTTAGCCCATTTTTTGTCCCTAAGATTCTGGTCAATAT
GGCAGCAGGCCAGGTCAGCATTCGATATAAACTCAAGGGCCCAAATCATGCAGTATCCACAGCCTGTACC
ACAGGAGCTCATGCTGTGGGAGACTCATTTAGATTTATAGCCCATGGTGATGCTGGTCACATAACTGCCC
CTGATCCTGAAGGAGAAGGTGCCTTAAGGTGTATGGCTGCTGCTTTAAAAGATGCAGGTGTGCAGCCTGA
GGAGATATCCTATATCAATGCACATGCTACTTCCACACCATTGGGAGATGCTGCTGAAAACAAAGCTATC
AAACATCTCTTCAAAGACCATGCATATGCCCTTGCAGTTTCCTCAACTAAGGGAGCAACAGGACATCTGC
TGGGAGCTGCAGGGGCAGTCGAGGCAGCTTTTACCACATTAGCTTGTTATTATCAAAAACTACCACCTAC
TTTAAACCTGGATTGTTCGGAACCAGAATTTGATCTCAACTATGTTCCACTAAAGGCACAGGAATGGAAA
ACTGAGAAAAGATTTATTGGCCTCACCAATTCCTTTGGTTTTGGTGGTACTAATGCAACACTTTGTATTG
CTGGACTGTAG

Translation (376 aa):
MSNCLQNFLKITSTRLLCSRLCQQLRSKRKFFGTVPISRLHRRVVITGIGLVTPLGVGTHLVWDRLIGGE
SGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSE
ADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACT
TGAHAVGDSFRFIAHGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAI
KHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWK
TEKRFIGLTNSFGFGGTNATLCIAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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