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Report for CCDS42912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42912.1 Public Homo sapiens 21 USP16 24 110 108 CCDS HistoryNCBI Gene:10600Re-query CCDS DB by CCDS ID:42912.1Re-query CCDS DB by GeneID:10600See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399975.7 ENSP00000382857.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399975.7Link to Ensembl Protein Viewer:ENSP00000382857.3Re-query CCDS DB by Nucleotide ID:ENST00000399975Re-query CCDS DB by Protein ID:ENSP00000382857
Original member Current member NCBI NM_001001992.2 NP_001001992.1 Accepted alive Link to Nucleotide Sequence:NM_001001992.2Link to Protein Sequence:NP_001001992.1Re-query CCDS DB by Nucleotide ID:NM_001001992Re-query CCDS DB by Protein ID:NP_001001992Link to BLAST:NP_001001992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001992.1 822 Q9Y5T5-2 822 100% 0 0

Chromosomal Locations for CCDS 42912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 29027914 29027974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29030595 29030773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29034837 29034940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29036271 29036374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29037279 29037463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29038335 29038430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29039026 29039156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29039481 29039568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29040609 29040687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29042013 29042104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29042472 29042528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29043423 29043599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29046667 29047321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29048761 29048855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29050092 29050178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29053802 29053958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 29054066 29054187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGGAAAGAAACGGACAAAGGGAAAAACTGTTCCAATCGATGATTCCTCTGAAACTTTAGAACCTGTGT
GCAGACACATTAGAAAAGGATTGGAACAAGGTAATTTGAAAAAGGCTTTAGTGAATGTGGAATGGAATAT
CTGCCAAGACTGTAAGACTGACAATAAAGTGAAAGATAAAGCTGAAGAAGAAACAGAAGAAAAGCCTTCA
GTTTGGCTGTGTCTTAAATGTGGCCATCAGGGCTGTGGCAGAAATTCTCAGGAGCAGCATGCCTTGAAGC
ACTATCTGACGCCAAGATCTGAACCTCACTGTCTGGTTCTTAGTTTGGACAACTGGAGTGTATGGTGTTA
CGTATGTGATAATGAGGTCCAGTATTGTAGTTCAAACCAGTTGGGTCAAGTGGTTGATTATGTCAGAAAA
CAAGCCAGCATTACAACTCCAAAGCCAGAGAAAGATAATGGAAATATTGAACTTGAAAATAAAAAATTAG
AAAAAGAGAGTAAGAATGAACAAGAGAGAGAAAAGAAGGAAAACATGGCTAAAGAGAATCCTCCCATGAA
TTCTCCTTGCCAAATAACCGTGAAAGGACTCAGTAATTTGGGAAACACATGTTTCTTCAATGCAGTTATG
CAGAACTTGTCACAAACACCAGTGCTTAGAGAACTACTAAAAGAAGTGAAAATGTCTGGAACAATTGTAA
AAATTGAACCACCTGATTTGGCATTAACAGAACCATTAGAAATAAACCTTGAGCCTCCAGGCCCTCTTAC
TTTAGCCATGAGCCAGTTTCTTAATGAGATGCAAGAGACCAAAAAGGGGGTTGTGACACCGAAAGAACTC
TTTTCTCAGGTCTGTAAAAAAGCAGTGCGGTTTAAAGGCTATCAGCAGCAAGACAGCCAGGAGCTGCTTC
GCTACTTATTGGATGGGATGAGAGCAGAAGAACACCAAAGAGTGAGTAAAGGAATACTTAAAGCATTTGG
TAATTCTACTGAAAAGTTGGATGAAGAACTAAAAAATAAAGTTAAAGATTATGAGAAGAAAAAATCAATG
CCAAGTTTTGTTGACCGCATCTTTGGTGGTGAACTAACTAGTATGATCATGTGTGATCAATGCAGAACTG
TCTCCTTGGTTCATGAATCTTTCCTTGATTTGTCCCTCCCAGTTTTAGATGATCAGAGTGGTAAGAAAAG
TGTAAATGATAAAAATCTGAAAAAGACAGTGGAGGATGAAGATCAAGATAGTGAGGAAGAAAAAGATAAC
GACAGTTACATAAAAGAGAGAAGTGATATTCCTTCTGGAACAAGTAAGCACTTACAGAAAAAAGCAAAGA
AACAAGCCAAAAAGCAAGCCAAGAACCAACGAAGACAACAAAAAATTCAAGGAAAAGTTCTTCATTTAAA
TGATATTTGTACTATTGACCATCCTGAAGACAGTGAATATGAAGCTGAAATGTCACTTCAAGGAGAAGTA
AATATTAAATCCAACCATATTTCACAAGAGGGTGTTATGCATAAAGAATATTGTGTCAACCAGAAAGATT
TGAATGGCCAAGCAAAAATGATCGAAAGTGTAACTGACAATCAAAAATCCACAGAGGAAGTAGATATGAA
AAATATCAACATGGATAATGATCTGGAGGTTTTAACATCTTCTCCCACTAGGAATTTAAATGGTGCCTAC
CTAACGGAAGGGAGCAATGGAGAAGTGGACATTTCCAATGGTTTCAAAAACCTAAATTTGAATGCTGCTC
TTCATCCTGATGAAATAAATATAGAGATTCTGAATGATAGTCATACTCCTGGAACAAAGGTGTATGAGGT
TGTAAATGAAGATCCAGAAACTGCTTTCTGTACTCTTGCAAACAGGGAAGTTTTCAATACTGATGAGTGT
TCAATCCAACATTGTTTATATCAGTTCACCCGTAATGAGAAACTTCGAGATGCGAATAAACTGCTTTGTG
AAGTATGCACACGGAGACAGTGTAATGGACCAAAGGCAAATATAAAAGGTGAAAGGAAGCATGTTTACAC
CAATGCCAAAAAGCAGATGCTAATTTCTCTTGCTCCTCCTGTTCTTACTCTTCATTTAAAGAGATTTCAG
CAGGCTGGTTTTAACCTACGCAAAGTTAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTCCTT
TTTGCACCCTTAAATGTAAGAATGTTGCAGAAGAAAATACAAGGGTACTCTATTCCTTATATGGAGTTGT
TGAACACAGTGGTACTATGAGGTCGGGGCATTACACTGCCTATGCCAAGGCAAGAACCGCAAATAGTCAT
CTCTCTAATCTTGTTCTTCACGGTGATATTCCACAAGATTTTGAAATGGAATCAAAAGGGCAGTGGTTTC
ACATCAGCGACACACATGTGCAAGCTGTGCCTACAACTAAAGTACTAAACTCACAAGCGTACCTCCTATT
TTATGAGAGAATACTGTAA

Translation (822 aa):
MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPS
VWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVDYVRK
QASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPMNSPCQITVKGLSNLGNTCFFNAVM
QNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKEL
FSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSM
PSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSEYEAEMSLQGEV
NIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAY
LTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDEC
SIQHCLYQFTRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQ
QAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSH
LSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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