NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4788.1 Public Homo sapiens 6 HMGA1 24 110 108 CCDS HistoryNCBI Gene:3159Re-query CCDS DB by CCDS ID:4788.1Re-query CCDS DB by GeneID:3159See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347617.10 ENSP00000288245.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347617.10Link to Ensembl Protein Viewer:ENSP00000288245.9Re-query CCDS DB by Nucleotide ID:ENST00000347617Re-query CCDS DB by Protein ID:ENSP00000288245
Original member Current member EBI ENST00000374116.3 ENSP00000363230.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374116.3Link to Ensembl Protein Viewer:ENSP00000363230.3Re-query CCDS DB by Nucleotide ID:ENST00000374116Re-query CCDS DB by Protein ID:ENSP00000363230
Original member Current member EBI ENST00000401473.7 ENSP00000385693.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401473.7Link to Ensembl Protein Viewer:ENSP00000385693.2Re-query CCDS DB by Nucleotide ID:ENST00000401473Re-query CCDS DB by Protein ID:ENSP00000385693
Original member Current member NCBI NM_001319077.2 NP_001306006.1 Accepted alive Link to Nucleotide Sequence:NM_001319077.2Link to Protein Sequence:NP_001306006.1Re-query CCDS DB by Nucleotide ID:NM_001319077Re-query CCDS DB by Protein ID:NP_001306006Link to BLAST:NP_001306006.1
Original member Current member NCBI NM_002131.4 NP_002122.1 Accepted alive Link to Nucleotide Sequence:NM_002131.4Link to Protein Sequence:NP_002122.1Re-query CCDS DB by Nucleotide ID:NM_002131Re-query CCDS DB by Protein ID:NP_002122Link to BLAST:NP_002122.1
Original member Current member NCBI NM_145902.3 NP_665909.1 Accepted alive Link to Nucleotide Sequence:NM_145902.3Link to Protein Sequence:NP_665909.1Re-query CCDS DB by Nucleotide ID:NM_145902Re-query CCDS DB by Protein ID:NP_665909Link to BLAST:NP_665909.1
Original member Current member NCBI NM_145903.3 NP_665910.1 Accepted alive Link to Nucleotide Sequence:NM_145903.3Link to Protein Sequence:NP_665910.1Re-query CCDS DB by Nucleotide ID:NM_145903Re-query CCDS DB by Protein ID:NP_665910Link to BLAST:NP_665910.1
Original member Current member NCBI NM_145905.3 NP_665912.1 Accepted alive Link to Nucleotide Sequence:NM_145905.3Link to Protein Sequence:NP_665912.1Re-query CCDS DB by Nucleotide ID:NM_145905Re-query CCDS DB by Protein ID:NP_665912Link to BLAST:NP_665912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306006.1 96 P17096-2 96 100% 0 0
NP_002122.1 96 P17096-2 96 100% 0 0
NP_665909.1 96 P17096-2 96 100% 0 0
NP_665910.1 96 P17096-2 96 100% 0 0
NP_665912.1 96 P17096-2 96 100% 0 0

Chromosomal Locations for CCDS 4788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34240781 34240882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34242712 34242795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34243468 34243518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34244831 34244884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGC
GGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGAAGGAGCCCAGCGAAGTGCCAACACCTAAGAGACCTCG
GGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGAAGG
AAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGG
AGGAGCAGTGA

Translation (96 aa):
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR
KPRGRPKKLEKEEEEGISQESSEEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH