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Report for CCDS7568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7568.1 Public Homo sapiens 10 SHOC2 24 110 108 CCDS HistoryNCBI Gene:8036Re-query CCDS DB by CCDS ID:7568.1Re-query CCDS DB by GeneID:8036See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7568.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369452.9 ENSP00000358464.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369452.9Link to Ensembl Protein Viewer:ENSP00000358464.5Re-query CCDS DB by Nucleotide ID:ENST00000369452Re-query CCDS DB by Protein ID:ENSP00000358464
Original member Current member EBI ENST00000688928.1 ENSP00000509273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688928.1Link to Ensembl Protein Viewer:ENSP00000509273.1Re-query CCDS DB by Nucleotide ID:ENST00000688928Re-query CCDS DB by Protein ID:ENSP00000509273
Original member Current member EBI ENST00000691441.1 ENSP00000509686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691441.1Link to Ensembl Protein Viewer:ENSP00000509686.1Re-query CCDS DB by Nucleotide ID:ENST00000691441Re-query CCDS DB by Protein ID:ENSP00000509686
Original member Current member EBI ENST00000691369.1 ENSP00000509754.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691369.1Link to Ensembl Protein Viewer:ENSP00000509754.1Re-query CCDS DB by Nucleotide ID:ENST00000691369Re-query CCDS DB by Protein ID:ENSP00000509754
Original member Current member EBI ENST00000685059.1 ENSP00000510210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685059.1Link to Ensembl Protein Viewer:ENSP00000510210.1Re-query CCDS DB by Nucleotide ID:ENST00000685059Re-query CCDS DB by Protein ID:ENSP00000510210
Original member Current member EBI ENST00000689118.1 ENSP00000510554.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689118.1Link to Ensembl Protein Viewer:ENSP00000510554.1Re-query CCDS DB by Nucleotide ID:ENST00000689118Re-query CCDS DB by Protein ID:ENSP00000510554
Original member Current member EBI ENST00000689300.1 ENSP00000510639.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689300.1Link to Ensembl Protein Viewer:ENSP00000510639.1Re-query CCDS DB by Nucleotide ID:ENST00000689300Re-query CCDS DB by Protein ID:ENSP00000510639
Original member Current member NCBI NM_001324336.2 NP_001311265.1 Accepted alive Link to Nucleotide Sequence:NM_001324336.2Link to Protein Sequence:NP_001311265.1Re-query CCDS DB by Nucleotide ID:NM_001324336Re-query CCDS DB by Protein ID:NP_001311265Link to BLAST:NP_001311265.1
Original member Current member NCBI NM_001324337.2 NP_001311266.1 Accepted alive Link to Nucleotide Sequence:NM_001324337.2Link to Protein Sequence:NP_001311266.1Re-query CCDS DB by Nucleotide ID:NM_001324337Re-query CCDS DB by Protein ID:NP_001311266Link to BLAST:NP_001311266.1
Original member Current member NCBI NM_007373.4 NP_031399.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007373.4Link to Protein Sequence:NP_031399.2Re-query CCDS DB by Nucleotide ID:NM_007373Re-query CCDS DB by Protein ID:NP_031399Link to BLAST:NP_031399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311265.1 582 Q9UQ13-1 582 100% 0 0
NP_001311266.1 582 Q9UQ13-1 582 100% 0 0
NP_031399.2 582 Q9UQ13-1 582 100% 0 0

Chromosomal Locations for CCDS 7568.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 110964359 110965061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110985628 110985765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111000415 111000545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111004606 111004794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111007531 111007653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111009248 111009385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111009713 111009830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 111011610 111011818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTACCATCAGCCAAGGAAA
GAGAAAAGGAGGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGG
GAAAGATGCCAAAGATGGAAAGAAGGACTCCAGTGCTGCCCAACCAGGGGTGGCATTTTCAGTTGACAAT
ACGATCAAACGGCCAAACCCAGCACCTGGGACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGC
TCAACAAATGCCGGGAAGAGAATTCAATGCGTTTGGACTTATCCAAGAGATCTATACACATATTGCCATC
ATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACAAATTGCAGTCCCTCCCAGCA
GAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGTTTGCCTGACT
CTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGT
GGTGTATAGGCTGGATTCTCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGAC
ATCAAAAACTTGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAA
TTGGTGAATTATGTAACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGAT
TGGAAACTGTACACAGATAACCAACCTTGACTTGCAGCACAATGAACTGCTAGACCTCCCAGATACTATA
GGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATAACAGACTGTCAGCAATACCCAGATCATTAG
CAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCTACTTTACCAGAGAGTCTTTT
ATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTGTATCCAGTGGGTGGT
CCATCTCAGTTTTCTACCATCTATTCCCTCAACATGGAACACAATCGAATCAACAAAATTCCATTTGGAA
TTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGA
TTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGAT
GTGTCTGGTCTCGTTTCTCTTGAGGTTCTTATCTTATCAAACAATCTTCTAAAGAAGCTTCCCCATGGTC
TTGGAAACCTTAGGAAGTTAAGAGAGTTGGATCTAGAAGAGAACAAATTGGAATCCTTGCCAAATGAAAT
TGCATATCTTAAGGATTTACAGAAATTAGTCTTGACAAACAACCAGTTGACCACTCTTCCCAGAGGCATT
GGTCACCTTACTAATCTCACACATCTGGGCCTTGGAGAGAACCTACTTACTCACCTTCCTGAAGAAATTG
GTACACTGGAGAACCTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTCCCTTTGAGCT
GGCACTCTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCTCAGATT
GTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATATCGTGCCATGGTCTGA

Translation (582 aa):
MSSSLGKEKDSKEKDPKVPSAKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSAAQPGVAFSVDN
TIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPA
EVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKD
IKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI
GNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGG
PSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGI
GHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQI
VAGGPSFIIQFLKMQGPYRAMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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