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Report for CCDS5477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5477.1 Public Homo sapiens 7 POLD2 24 110 108 CCDS HistoryNCBI Gene:5425Re-query CCDS DB by CCDS ID:5477.1Re-query CCDS DB by GeneID:5425See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406581.6 ENSP00000386105.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406581.6Link to Ensembl Protein Viewer:ENSP00000386105.2Re-query CCDS DB by Nucleotide ID:ENST00000406581Re-query CCDS DB by Protein ID:ENSP00000386105
Original member Current member EBI ENST00000452185.5 ENSP00000395231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452185.5Link to Ensembl Protein Viewer:ENSP00000395231.1Re-query CCDS DB by Nucleotide ID:ENST00000452185Re-query CCDS DB by Protein ID:ENSP00000395231
Original member Current member EBI ENST00000418438.2 ENSP00000406702.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418438.2Link to Ensembl Protein Viewer:ENSP00000406702.2Re-query CCDS DB by Nucleotide ID:ENST00000418438Re-query CCDS DB by Protein ID:ENSP00000406702
Original member Current member EBI ENST00000610533.6 ENSP00000480186.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610533.6Link to Ensembl Protein Viewer:ENSP00000480186.2Re-query CCDS DB by Nucleotide ID:ENST00000610533Re-query CCDS DB by Protein ID:ENSP00000480186
Original member Current member EBI ENST00000698945.1 ENSP00000514051.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698945.1Link to Ensembl Protein Viewer:ENSP00000514051.1Re-query CCDS DB by Nucleotide ID:ENST00000698945Re-query CCDS DB by Protein ID:ENSP00000514051
Original member Current member EBI ENST00000698946.1 ENSP00000514052.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698946.1Link to Ensembl Protein Viewer:ENSP00000514052.1Re-query CCDS DB by Nucleotide ID:ENST00000698946Re-query CCDS DB by Protein ID:ENSP00000514052
Original member Current member EBI ENST00000698947.1 ENSP00000514053.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698947.1Link to Ensembl Protein Viewer:ENSP00000514053.1Re-query CCDS DB by Nucleotide ID:ENST00000698947Re-query CCDS DB by Protein ID:ENSP00000514053
Original member Current member NCBI NM_001127218.3 NP_001120690.1 Accepted alive Link to Nucleotide Sequence:NM_001127218.3Link to Protein Sequence:NP_001120690.1Re-query CCDS DB by Nucleotide ID:NM_001127218Re-query CCDS DB by Protein ID:NP_001120690Link to BLAST:NP_001120690.1
Original member Current member NCBI NM_001256879.2 NP_001243808.1 Accepted alive Link to Nucleotide Sequence:NM_001256879.2Link to Protein Sequence:NP_001243808.1Re-query CCDS DB by Nucleotide ID:NM_001256879Re-query CCDS DB by Protein ID:NP_001243808Link to BLAST:NP_001243808.1
Original member Current member NCBI NM_006230.4 NP_006221.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006230.4Link to Protein Sequence:NP_006221.3Re-query CCDS DB by Nucleotide ID:NM_006230Re-query CCDS DB by Protein ID:NP_006221Link to BLAST:NP_006221.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120690.1 469 P49005 469 100% 0 0
NP_001243808.1 469 P49005 469 100% 0 0
NP_006221.3 469 P49005 469 100% 0 0

Chromosomal Locations for CCDS 5477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44114785 44114945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44115295 44115396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44115766 44115893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44116115 44116272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44116430 44116510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44116817 44117015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44117133 44117247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44117619 44117742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44117943 44118064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44121834 44122053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGTTTTCTGAGCAGGCTGCCCAGAGGGCCCACACTCTACTGTCCCCACCATCAGCCAACAATGCCACCT
TTGCCCGGGTGCCAGTGGCAACCTACACCAACTCCTCACAACCCTTCCGGCTAGGAGAGCGCAGCTTTAG
CCGGCAGTATGCCCACATTTATGCCACCCGCCTCATCCAAATGAGACCCTTCCTGGAGAACCGGGCCCAG
CAGCACTGGGGCAGTGGAGTGGGAGTGAAGAAGCTGTGTGAACTGCAGCCTGAGGAGAAGTGCTGTGTGG
TGGGCACTCTGTTCAAGGCCATGCCGCTGCAGCCCTCCATCCTGCGGGAGGTCAGCGAGGAGCACAACCT
GCTCCCCCAGCCTCCTCGGAGTAAATACATACACCCAGATGACGAGCTGGTCTTGGAAGATGAACTGCAG
CGTATCAAACTAAAAGGCACCATTGACGTGTCAAAGCTGGTTACGGGGACTGTCCTGGCTGTGTTTGGCT
CCGTGAGAGACGACGGGAAGTTTCTGGTGGAGGACTATTGCTTTGCTGACCTTGCTCCCCAGAAGCCCGC
ACCCCCACTTGACACAGATAGGTTTGTGCTACTGGTGTCCGGCCTGGGCCTGGGTGGCGGTGGAGGCGAG
AGCCTGCTGGGCACCCAGCTGCTGGTGGATGTGGTGACGGGGCAGCTTGGGGACGAAGGGGAGCAGTGCA
GCGCCGCCCACGTCTCCCGGGTTATCCTCGCTGGCAACCTCCTCAGCCACAGCACCCAGAGCAGGGATTC
TATCAATAAGGCCAAATACCTCACCAAGAAAACCCAGGCAGCCAGCGTGGAGGCTGTTAAGATGCTGGAT
GAGATCCTCCTGCAGCTGAGCGCCTCAGTGCCCGTGGACGTGATGCCAGGCGAGTTTGATCCCACCAATT
ACACGCTCCCCCAGCAGCCCCTCCACCCCTGCATGTTCCCGCTGGCCACTGCCTACTCCACGCTCCAGCT
GGTCACCAACCCCTACCAGGCCACCATTGATGGAGTCAGATTTTTGGGGACATCAGGACAGAACGTGAGT
GACATTTTCCGATACAGCAGCATGGAGGATCACTTGGAGATCCTGGAGTGGACCCTGCGGGTCCGTCACA
TCAGCCCCACAGCCCCTGACACTCTAGGTTGTTACCCCTTCTACAAAACTGACCCGTTCATCTTCCCAGA
GTGCCCGCATGTCTACTTTTGTGGCAACACCCCCAGCTTTGGCTCCAAAATCATCCGAGGTCCTGAGGAC
CAGACAGTGCTGTTGGTGACTGTCCCTGACTTCAGTGCCACGCAGACCGCCTGCCTTGTGAACCTGCGCA
GCCTGGCCTGCCAGCCCATCAGCTTCTCGGGCTTCGGGGCAGAGGACGATGACCTGGGAGGCCTGGGGCT
GGGCCCCTGA

Translation (469 aa):
MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQ
QHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQ
RIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE
SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLD
EILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVS
DIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED
QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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