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Report for CCDS6964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6964.1 Public Homo sapiens 9 MED22 24 110 108 CCDS HistoryNCBI Gene:6837Re-query CCDS DB by CCDS ID:6964.1Re-query CCDS DB by GeneID:6837See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610888.4 ENSP00000478773.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610888.4Link to Ensembl Protein Viewer:ENSP00000478773.1Re-query CCDS DB by Nucleotide ID:ENST00000610888Re-query CCDS DB by Protein ID:ENSP00000478773
Original member Current member EBI ENST00000614493.4 ENSP00000481493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614493.4Link to Ensembl Protein Viewer:ENSP00000481493.1Re-query CCDS DB by Nucleotide ID:ENST00000614493Re-query CCDS DB by Protein ID:ENSP00000481493
Original member Current member NCBI NM_181491.3 NP_852468.1 Accepted alive Link to Nucleotide Sequence:NM_181491.3Link to Protein Sequence:NP_852468.1Re-query CCDS DB by Nucleotide ID:NM_181491Re-query CCDS DB by Protein ID:NP_852468Link to BLAST:NP_852468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852468.1 140 Q15528-2 140 100% 0 0

Chromosomal Locations for CCDS 6964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133344115 133344333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133345172 133345252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133346540 133346662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCCCAGCAGAGAGCCCTGCCCCAGAGCAAGGAGACGCTGCTGCAGTCCTACAACAAGCGGCTGAAGG
ACGACATTAAGTCCATCATGGACAACTTCACCGAGATCATCAAGACCGCCAAGATTGAGGACGAGACGCA
GGTGTCACGGGCCACTCAGGGTGAACAGGACAATTACGAGATGCATGTGCGAGCCGCCAACATCGTCCGA
GCCGGCGAGTCCCTGATGAAGCTGGTGTCCGACCTCAAGCAGTTCCTGATCCTCAATGACTTCCCCTCCG
TGAACGAGGCCATTGACCAGCGCAACCAGCAGCTGCGCACACTGCAGGAGGAGTGCGACCGGAAGCTCAT
CACGCTGCGAGACGAGATCTCCATTGACCTCTACGAGCTGGAGGAGGAGTATTACTCGTCCAGGTATAAA
TAG

Translation (140 aa):
MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVR
AGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLYELEEEYYSSRYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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