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Report for CCDS6221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6221.1 Public Homo sapiens 8 PEX2 24 110 108 CCDS HistoryNCBI Gene:5828Re-query CCDS DB by CCDS ID:6221.1Re-query CCDS DB by GeneID:5828See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357039.9 ENSP00000349543.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357039.9Link to Ensembl Protein Viewer:ENSP00000349543.4Re-query CCDS DB by Nucleotide ID:ENST00000357039Re-query CCDS DB by Protein ID:ENSP00000349543
Original member Current member EBI ENST00000520103.5 ENSP00000428590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520103.5Link to Ensembl Protein Viewer:ENSP00000428590.1Re-query CCDS DB by Nucleotide ID:ENST00000520103Re-query CCDS DB by Protein ID:ENSP00000428590
Original member Current member EBI ENST00000522527.5 ENSP00000428638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522527.5Link to Ensembl Protein Viewer:ENSP00000428638.1Re-query CCDS DB by Nucleotide ID:ENST00000522527Re-query CCDS DB by Protein ID:ENSP00000428638
Original member Current member NCBI NM_000318.3 NP_000309.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000318.3Link to Protein Sequence:NP_000309.2Re-query CCDS DB by Nucleotide ID:NM_000318Re-query CCDS DB by Protein ID:NP_000309Link to BLAST:NP_000309.2
Original member Current member NCBI NM_001079867.2 NP_001073336.2 Accepted alive Link to Nucleotide Sequence:NM_001079867.2Link to Protein Sequence:NP_001073336.2Re-query CCDS DB by Nucleotide ID:NM_001079867Re-query CCDS DB by Protein ID:NP_001073336Link to BLAST:NP_001073336.2
Original member Current member NCBI NM_001172086.2 NP_001165557.2 Accepted alive Link to Nucleotide Sequence:NM_001172086.2Link to Protein Sequence:NP_001165557.2Re-query CCDS DB by Nucleotide ID:NM_001172086Re-query CCDS DB by Protein ID:NP_001165557Link to BLAST:NP_001165557.2
Original member Current member NCBI NM_001172087.2 NP_001165558.2 Accepted alive Link to Nucleotide Sequence:NM_001172087.2Link to Protein Sequence:NP_001165558.2Re-query CCDS DB by Nucleotide ID:NM_001172087Re-query CCDS DB by Protein ID:NP_001165558Link to BLAST:NP_001165558.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000309.2 305 P28328 305 100% 0 0
NP_001073336.2 305 P28328 305 100% 0 0
NP_001165557.2 305 P28328 305 100% 0 0
NP_001165558.2 305 P28328 305 100% 0 0

Chromosomal Locations for CCDS 6221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 76983261 76984178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCTTCCAGAAAAGAGAATGCGAAGAGTGCAAACAGAGTGCTAAGAATAAGCCAGTTGGATGCACTTG
AACTAAACAAGGCCCTGGAGCAGCTAGTTTGGTCCCAGTTTACTCAGTGCTTTCATGGATTTAAACCTGG
GCTGTTAGCTCGCTTTGAGCCAGAGGTGAAAGCGTGCTTATGGGTTTTCTTGTGGAGATTCACCATCTAC
TCCAAAAATGCCACAGTGGGACAGTCAGTTTTGAATATTAAGTACAAAAATGATTTTTCCCCTAACCTGA
GATATCAGCCACCCAGTAAAAATCAAAAAATCTGGTATGCTGTTTGTACAATTGGTGGCAGGTGGTTAGA
AGAACGATGCTATGATTTGTTTCGAAACCATCATTTAGCATCATTTGGGAAAGTCAAGCAGTGTGTGAAT
TTTGTGATTGGACTTTTGAAATTAGGTGGGCTGATTAATTTTTTGATTTTCCTTCAGAGGGGAAAGTTTG
CAACTTTGACAGAACGTCTCCTAGGTATTCATTCTGTATTTTGCAAGCCTCAAAACATATGTGAAGTTGG
CTTTGAATACATGAATAGGGAACTTCTCTGGCATGGTTTTGCTGAATTTCTGATTTTTCTCTTACCACTT
ATCAATGTCCAGAAGTTGAAAGCCAAGCTGTCTTCATGGTGTATTCCTCTTACTGGTGCACCTAATAGTG
ACAATACATTAGCCACCAGTGGCAAAGAATGCGCTCTATGTGGAGAGTGGCCCACCATGCCTCACACCAT
AGGATGTGAGCATATTTTCTGTTATTTCTGTGCTAAGAGTAGTTTCTTATTTGACGTGTACTTTACTTGT
CCTAAGTGTGGCACAGAAGTACACAGTCTGCAGCCACTGAAATCAGGAATCGAGATGTCAGAAGTAAATG
CTCTTTAG

Translation (305 aa):
MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIY
SKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGKVKQCVN
FVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFEYMNRELLWHGFAEFLIFLLPL
INVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTC
PKCGTEVHSLQPLKSGIEMSEVNAL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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