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Report for CCDS5195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5195.1 Public Homo sapiens 6 CITED2 24 110 108 CCDS HistoryNCBI Gene:10370Re-query CCDS DB by CCDS ID:5195.1Re-query CCDS DB by GeneID:10370See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367651.4 ENSP00000356623.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367651.4Link to Ensembl Protein Viewer:ENSP00000356623.2Re-query CCDS DB by Nucleotide ID:ENST00000367651Re-query CCDS DB by Protein ID:ENSP00000356623
Original member Current member EBI ENST00000536159.2 ENSP00000442831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536159.2Link to Ensembl Protein Viewer:ENSP00000442831.1Re-query CCDS DB by Nucleotide ID:ENST00000536159Re-query CCDS DB by Protein ID:ENSP00000442831
Original member Current member NCBI NM_001168388.3 NP_001161860.1 Accepted alive Link to Nucleotide Sequence:NM_001168388.3Link to Protein Sequence:NP_001161860.1Re-query CCDS DB by Nucleotide ID:NM_001168388Re-query CCDS DB by Protein ID:NP_001161860Link to BLAST:NP_001161860.1
Original member Current member NCBI NM_006079.5 NP_006070.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006079.5Link to Protein Sequence:NP_006070.2Re-query CCDS DB by Nucleotide ID:NM_006079Re-query CCDS DB by Protein ID:NP_006070Link to BLAST:NP_006070.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161860.1 270 Q99967-1 270 100% 0 0
NP_006070.2 270 Q99967-1 270 100% 0 0

Chromosomal Locations for CCDS 5195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 139373132 139373944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGCAGACCATATGATGGCCATGAACCACGGGCGCTTCCCCGACGGCACCAATGGGCTGCACCATCACC
CTGCCCACCGCATGGGCATGGGGCAGTTCCCGAGCCCCCATCACCACCAGCAGCAGCAGCCCCAGCACGC
CTTCAACGCCCTAATGGGCGAGCACATACACTACGGCGCGGGCAACATGAATGCCACGAGCGGCATCAGG
CATGCGATGGGGCCGGGGACTGTGAACGGAGGGCACCCCCCGAGCGCGCTGGCCCCCGCGGCCAGGTTTA
ACAACTCCCAGTTCATGGGTCCCCCGGTGGCCAGCCAGGGAGGCTCCCTGCCGGCCAGCATGCAGCTGCA
GAAGCTCAACAACCAGTATTTCAACCATCACCCCTACCCCCACAACCACTACATGCCGGATTTGCACCCT
GCTGCAGGCCACCAGATGAACGGGACAAACCAGCACTTCCGAGATTGCAACCCCAAGCACAGCGGCGGCA
GCAGCACCCCCGGCGGCTCGGGCGGCAGCAGCACCCCCGGCGGCTCTGGCAGCAGCTCGGGCGGCGGCGC
GGGCAGCAGCAACAGCGGCGGCGGCAGCGGCAGCGGCAACATGCCCGCCTCCGTGGCCCACGTCCCCGCT
GCAATGCTGCCGCCCAATGTCATAGACACTGATTTCATCGACGAGGAAGTTCTTATGTCCTTGGTGATAG
AAATGGGTTTGGACCGCATCAAGGAGCTGCCCGAACTCTGGCTGGGGCAAAACGAGTTTGATTTTATGAC
GGACTTCGTGTGCAAACAGCAGCCCAGCAGAGTGAGCTGTTGA

Translation (270 aa):
MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGAGNMNATSGIR
HAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLNNQYFNHHPYPHNHYMPDLHP
AAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPA
AMLPPNVIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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