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Report for CCDS16.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16.1 Public Homo sapiens 1 UBE2J2 24 110 108 CCDS HistoryNCBI Gene:118424Re-query CCDS DB by CCDS ID:16.1Re-query CCDS DB by GeneID:118424See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347370.6 ENSP00000344857.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347370.6Link to Ensembl Protein Viewer:ENSP00000344857.2Re-query CCDS DB by Nucleotide ID:ENST00000347370Re-query CCDS DB by Protein ID:ENSP00000344857
Original member Current member EBI ENST00000400929.6 ENSP00000383718.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400929.6Link to Ensembl Protein Viewer:ENSP00000383718.2Re-query CCDS DB by Nucleotide ID:ENST00000400929Re-query CCDS DB by Protein ID:ENSP00000383718
Original member Current member NCBI NM_194457.2 NP_919439.1 Accepted alive Link to Nucleotide Sequence:NM_194457.2Link to Protein Sequence:NP_919439.1Re-query CCDS DB by Nucleotide ID:NM_194457Re-query CCDS DB by Protein ID:NP_919439Link to BLAST:NP_919439.1
Original member Current member NCBI NM_194458.2 NP_919440.1 Accepted alive Link to Nucleotide Sequence:NM_194458.2Link to Protein Sequence:NP_919440.1Re-query CCDS DB by Nucleotide ID:NM_194458Re-query CCDS DB by Protein ID:NP_919440Link to BLAST:NP_919440.1

Chromosomal Locations for CCDS 16.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1255203 1255487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1256045 1256125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1256992 1257130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1257208 1257310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1263346 1263361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACCCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTC
CCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAGGCTGTGTCTTTCTATCACGGA
TTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATG
GTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACGAAAAGACAACTGGCAGTGCAGA
GTTTAGCATTTAATTTGAAAGATAAAGTCTTTTGTGAATTATTTCCTGAAGTCGTGGAGGAGATTAAACA
AAAACAGAAAGCACAAGACGAACTCAGTAGCAGACCCCAGACTCTCCCCTTGCCAGACGTGGTTCCAGAC
GGGGAGACGCACCTCGTCCAGAACGGGATTCAGCTGCTCAACGGGCATGCGCCGGGGGCCGTCCCAAACC
TCGCAGGGCTCCAGCAGGCCAACCGGCACCACGGACTCCTGGGTGGCGCCCTGGCGAACTTGTTTGTGAT
AGTTGGGTTTGCAGCCTTTGCTTACACGGTCAAGTACGTGCTGAGGAGCATCGCGCAGGAGTGA

Translation (207 aa):
MTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM
VEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPD
GETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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